Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6099
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.7  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   5.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   10.0 

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 248 SIICLVLSCAHNLCCKPDFVSFYLCFLCIFLACDVYCE 135
           +I+    + +    C+ +   F LC  C F ACD  CE
Sbjct: 723 AIVSASTARSEQFLCRYEAHCFALCHCCDFDACD--CE 758


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 177 QVKRNKIWLAT*VMCARQNKTYNAEFMQQRSLQLRQ 284
           ++ RN++ L    + +R+N  +N   +   ++QLRQ
Sbjct: 39  RISRNRVLLRGQCISSRRNGRHNVHSLAFGAIQLRQ 74


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 338 YSQYNTLNNYIN 373
           YS YN  NNY N
Sbjct: 324 YSNYNNYNNYNN 335


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = -2

Query: 304 VFVIVLFCRNCKERCCINSALYVLFCRAHITYVASQILFLFTCVFYVYF*LVMC 143
           ++++  FCRNC      +   ++ +C + I      I  LF+  F   F  ++C
Sbjct: 28  MYLVRAFCRNCIHPTVFSVLFWLGYCNSAIN---PCIYALFSKDFRFAFKSIIC 78


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = -2

Query: 304 VFVIVLFCRNCKERCCINSALYVLFCRAHITYVASQILFLFTCVFYVYF*LVMC 143
           ++++  FCRNC      +   ++ +C + I      I  LF+  F   F  ++C
Sbjct: 476 MYLVRAFCRNCIHPTVFSVLFWLGYCNSAIN---PCIYALFSKDFRFAFKSIIC 526


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 4    RFDSKNILWHLRHYNNNHCLI 66
            R D++   W   H  N HC I
Sbjct: 1669 RLDTEMSTWGYHHNVNKHCTI 1689


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 514 NTKFQVNRMHG 482
           NT FQVN+ HG
Sbjct: 688 NTHFQVNQSHG 698


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 622 ASLGISKLTLLFIVIIIRGSNTHINISLSSTRIFY 518
           AS G  K+T   ++    G + ++     STR+FY
Sbjct: 250 ASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRLFY 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,618
Number of Sequences: 438
Number of extensions: 5024
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)