Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6098
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236...    31   0.73 
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397...    29   1.7  
01_06_1171 - 35089719-35090336,35090596-35090715,35090851-350911...    29   2.9  

>04_03_0983 +
           21423086-21423280,21423330-21423404,21423531-21423632,
           21423721-21423774,21423880-21423972,21424526-21424618,
           21427329-21427433,21427517-21427615,21427701-21427997,
           21428512-21428622
          Length = 407

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 284 KSPLTRFFPFIIYASTFRAHLFLLFRWVDQLIVHLVLS 171
           K+ L RFF F  + S F   +FL+ RW+D+ +   +++
Sbjct: 40  KASLLRFF-FFFFLSLFVRSVFLIDRWIDENVAREIIN 76


>06_01_0558 -
           3968211-3969475,3970198-3970266,3970374-3970529,
           3971075-3971405
          Length = 606

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 358 LRGLKEIIKHINFFFFFSIAPSLLRIATPLYLVDCHPTSDPVRFPGV 498
           +  L+E+  H+N  FFF + PS +R  T L ++D        RFP +
Sbjct: 190 MTSLREL--HLNGNFFFGVLPSCIRNLTFLRVLDLSNNLLTARFPTI 234


>01_06_1171 -
           35089719-35090336,35090596-35090715,35090851-35091108,
           35091934-35092563
          Length = 541

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 93  VTTAAPLLPSRNALLLHGRNTQGSVLPART 4
           V T +P  PSRN  LL  R++  ++LP RT
Sbjct: 484 VVTFSPSPPSRNQHLLSPRSSTSALLPPRT 513


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,612,945
Number of Sequences: 37544
Number of extensions: 263533
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)