Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6098
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74028-1|CAA98424.1|  334|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL008868-3|CAH04724.1|  362|Caenorhabditis elegans Hypothetical ...    28   3.4  
AL008868-2|CAA15513.1|  365|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF003136-5|AAK21372.1|  203|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF036703-3|AAB88556.2|  424|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z74028-1|CAA98424.1|  334|Caenorhabditis elegans Hypothetical
           protein C14C10.1 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 433 IATPLYLVDCHPTSDPVRFPGVVQ 504
           + TPL +V C    DP+++ GVVQ
Sbjct: 52  VITPLDIVKCRMQVDPLKYTGVVQ 75


>AL008868-3|CAH04724.1|  362|Caenorhabditis elegans Hypothetical
           protein C53C7.1b protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 421 SLLRIATPLYLVDCHPTSDPVR 486
           +L  IA   Y++ CHPT +P+R
Sbjct: 118 TLTAIAIDRYILICHPTKEPIR 139


>AL008868-2|CAA15513.1|  365|Caenorhabditis elegans Hypothetical
           protein C53C7.1a protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 421 SLLRIATPLYLVDCHPTSDPVR 486
           +L  IA   Y++ CHPT +P+R
Sbjct: 118 TLTAIAIDRYILICHPTKEPIR 139


>AF003136-5|AAK21372.1|  203|Caenorhabditis elegans Hypothetical
           protein F28B3.4 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 376 IIKHINFFFFFSIAPSLLRIATPLYLVDCHPTSDPV 483
           ++K + F FF SIAP++L  +  L+L+  HP   P+
Sbjct: 2   LLKQLLFLFFSSIAPAVLNNSW-LFLLVLHPFDIPL 36


>AF036703-3|AAB88556.2|  424|Caenorhabditis elegans Hypothetical
           protein T11F8.2 protein.
          Length = 424

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -1

Query: 296 YKYRKSPLTRFFPFIIYASTFRAHLFLLFRWVDQLIVHLVLSDYWSS 156
           Y +++SP+T +F F +         FL    ++ L  ++  +D W +
Sbjct: 284 YNFQRSPMTTYFAFFVCNVLTALVYFLFIHEMEPLCRNMQCNDGWKN 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,631,091
Number of Sequences: 27780
Number of extensions: 238026
Number of successful extensions: 495
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)