Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6098
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   1.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   10.0 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   10.0 

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 364 GLKEIIKHINFFF 402
           GL EIIK +N FF
Sbjct: 233 GLMEIIKFVNIFF 245


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 325 SSEQFTITVYFLRGLKEIIKHINFFFFFSIAP 420
           +++ F    Y +  LKE+ K INF +  +++P
Sbjct: 453 TTKTFCCKGYCMDLLKELSKTINFTYSLALSP 484


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 423 IAEDRDSALPCRLSPYIGSG 482
           + EDR+    C+ S  IGSG
Sbjct: 776 VKEDREGFYLCQASNGIGSG 795


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 423 IAEDRDSALPCRLSPYIGSG 482
           + EDR+    C+ S  IGSG
Sbjct: 772 VKEDREGFYLCQASNGIGSG 791


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 257 TEKTVSKGSFYT 292
           T KT+ KGSF T
Sbjct: 512 TMKTIKKGSFVT 523


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 85  RCNYT*DFELISQGGW 132
           RCN T  F  I   GW
Sbjct: 363 RCNATGAFSWIGSDGW 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,866
Number of Sequences: 438
Number of extensions: 3163
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)