Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6097
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0685 + 22044167-22045228,22045319-22045504,22045630-22045947     27   8.1  
01_01_0168 + 1433084-1433320,1433432-1434889,1435443-1435496           27   8.1  

>12_02_0685 + 22044167-22045228,22045319-22045504,22045630-22045947
          Length = 521

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 171 RRPINFYKTVAPAPVHETFSDHNNAGNAYFSSLHKQNLDYYNHQNYD 311
           R P+  +  VAPAP+H   +    AG A  + L   ++D ++H + D
Sbjct: 89  RLPVLTFHRVAPAPLHAALATVAAAGGAAPALL---DIDLFSHHDLD 132


>01_01_0168 + 1433084-1433320,1433432-1434889,1435443-1435496
          Length = 582

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +3

Query: 9   VPNGIARIITILCYLAVARASIIDTDYPPAASVSYSSISTPINGKTIINPSTEVRRP 179
           VP  +   + +    AV R  I+  +Y  AA+ + + +   INGK + +P+TE  RP
Sbjct: 397 VPAKLLDYVAVAEEEAVQRRYIVMYEYEDAATGNPTHLY--INGKRLEDPATETPRP 451


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,650,505
Number of Sequences: 37544
Number of extensions: 295030
Number of successful extensions: 683
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)