Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6097
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical pr...    34   0.083
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    31   0.78 
Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U96695-1|AAB57697.1|  491|Caenorhabditis elegans deoxyuridinetri...    29   2.4  
U41016-5|AAP46274.1|  811|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U41016-4|AAP46275.1|  809|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U41016-3|AAM51497.1|  901|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U41016-2|AAM51496.1|  899|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    28   4.1  
Z73971-8|CAA98250.1|  488|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U00063-2|AAK18961.1|  329|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical
           protein DH11.2 protein.
          Length = 411

 Score = 33.9 bits (74), Expect = 0.083
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 374 QRSRTLGTLCLHTSCTQVYCCDLRNPFYSLFQ 469
           Q SR+ GT    T C++VY C L +P + L+Q
Sbjct: 49  QVSRSFGTFVHRTLCSKVYYCALHDPVWELYQ 80


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = +3

Query: 90  PPAASVSYSSISTPINGKTIINPSTEVRRPINFYKTVAPAPVHETFSDHNNAGNAYFSSL 269
           PP +S++  SIS+   G +I  PST      +   T  P+    + +      NA  SSL
Sbjct: 200 PPLSSIT--SISSSAAGSSISAPSTSQPSTTSSLITSPPSTSSSSMAPRKTPPNASSSSL 257

Query: 270 HK-QNLDYYNHQNYDTPVYLNTYQ 338
            K Q+ D    Q  D  V  N  Q
Sbjct: 258 IKRQSQDVQEQQRVDFEVARNVSQ 281


>Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical
           protein K07A1.2 protein.
          Length = 491

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 108 SYSSISTPINGKTIINPSTEVRRPINFYKTVAP 206
           S   +  P NGK  ++   ++  PI +Y  VAP
Sbjct: 57  SAEDVVVPANGKLCVSTGLQIELPIGYYGRVAP 89


>U96695-1|AAB57697.1|  491|Caenorhabditis elegans
           deoxyuridinetriphosphatase protein.
          Length = 491

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 108 SYSSISTPINGKTIINPSTEVRRPINFYKTVAP 206
           S   +  P NGK  ++   ++  PI +Y  VAP
Sbjct: 57  SAEDVVVPANGKLCVSTGLQIELPIGYYGRVAP 89


>U41016-5|AAP46274.1|  811|Caenorhabditis elegans Hypothetical
           protein R11G1.6c protein.
          Length = 811

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 330 TYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIAVT 440
           T    PI ++PH+N + H P+V S +T    K+++ T
Sbjct: 466 TTHRRPI-YDPHDNFDGHEPIVPSKTTTVTVKTVSQT 501


>U41016-4|AAP46275.1|  809|Caenorhabditis elegans Hypothetical
           protein R11G1.6d protein.
          Length = 809

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 330 TYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIAVT 440
           T    PI ++PH+N + H P+V S +T    K+++ T
Sbjct: 466 TTHRRPI-YDPHDNFDGHEPIVPSKTTTVTVKTVSQT 501


>U41016-3|AAM51497.1|  901|Caenorhabditis elegans Hypothetical
           protein R11G1.6b protein.
          Length = 901

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 330 TYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIAVT 440
           T    PI ++PH+N + H P+V S +T    K+++ T
Sbjct: 556 TTHRRPI-YDPHDNFDGHEPIVPSKTTTVTVKTVSQT 591


>U41016-2|AAM51496.1|  899|Caenorhabditis elegans Hypothetical
           protein R11G1.6a protein.
          Length = 899

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 330 TYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIAVT 440
           T    PI ++PH+N + H P+V S +T    K+++ T
Sbjct: 556 TTHRRPI-YDPHDNFDGHEPIVPSKTTTVTVKTVSQT 591


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 389  LGTLCLHTSCTQVYCCDLRNPFYSLF 466
            +G  CL   C   YCC L N F   F
Sbjct: 8507 MGAACLVPHCDDEYCCQLLNNFAKSF 8532


>Z73971-8|CAA98250.1|  488|Caenorhabditis elegans Hypothetical
           protein C50H2.2b protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/51 (19%), Positives = 28/51 (54%)
 Frame = +3

Query: 207 APVHETFSDHNNAGNAYFSSLHKQNLDYYNHQNYDTPVYLNTYQHEPIGFN 359
           +P+H   S H+   +++ +++HK N+D  ++ + +  + L+   +  +  N
Sbjct: 8   SPLHIDLSQHHPDNHSHRNNIHKPNMDNLDNSDVENALILDNLDNHHMTSN 58


>Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical
           protein K10G9.2 protein.
          Length = 240

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/77 (20%), Positives = 32/77 (41%)
 Frame = +3

Query: 204 PAPVHETFSDHNNAGNAYFSSLHKQNLDYYNHQNYDTPVYLNTYQHEPIGFNPHENINVH 383
           P P H   +  +   +  +S+LH +     +  NY+    L+          PH  +N  
Sbjct: 100 PIPSHRHSASGSRRQSRVYSNLHSKRKRSNSLTNYNKGQSLSVSLPPSARHTPHRFVNEE 159

Query: 384 GPLVHSVSTLAAHKSIA 434
               +S+++  +H S+A
Sbjct: 160 DAFRNSMASSDSHSSVA 176


>Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK1053.2 protein.
          Length = 536

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
 Frame = +3

Query: 210 PVHETFSDHNNAGNAYFSSLHKQNLDYYNHQNY--------DTPVYLNTYQHEPIGFNPH 365
           PV E+    +N  +++  ++ K   +Y NH+N         D   +L  +Q +  G +  
Sbjct: 107 PVKESSKPSSNPCDSFRQAIAKTPSEYLNHENVQFIVSVFGDATCFLKAFQSQFNGNSRK 166

Query: 366 ENINVHGPLVHSVSTLAAHKSI 431
           ++   +G LV+S  T + ++SI
Sbjct: 167 KSFFYNGILVNSNLTNSNNQSI 188


>U00063-2|AAK18961.1|  329|Caenorhabditis elegans Hypothetical
           protein F56C9.6 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 228 SDHNNAGNAYFSSLHKQNLDYYNHQN 305
           S+H+++G++YF++ HK   +Y    N
Sbjct: 147 SEHSSSGDSYFNNSHKTTPNYRRFAN 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,150,371
Number of Sequences: 27780
Number of extensions: 284217
Number of successful extensions: 852
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)