Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6096
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    27   3.7  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   3.7  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   8.6  

>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -3

Query: 290 VITLTNRQ*LLYYRSKDNIYLNNETSMEA*RWTPIIRQQKTV 165
           +I LT+++ L+YY    +IY+  +   E  +    ++QQ+ +
Sbjct: 287 IIDLTSKKQLVYYGGNFDIYMRTKEENETNQMKAYLKQQEEI 328


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 710 HFVEVLYTAHTLNPLSFGF 654
           HF  V YTA+ L+PL FGF
Sbjct: 7   HFYNVTYTAYRLSPL-FGF 24


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 552 VSSRAQPERITHTGPNKSSGSLNLPPDRNRDLRRKP 659
           +S+R  P   +   P  +S S+ LP D N  +R KP
Sbjct: 55  MSTRLSPMYTSSLTPRFTSNSMVLPGDHNTTVRLKP 90


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +3

Query: 282 CNHSSIAKPLVLNHFLSVAAHVTFSNSVLEPGNANTIIMFLCT*SVNKLSLITLFTFPSG 461
           C ++++ +P  L HF  +  + +  N  +   +     + LCT  V K++  T   F + 
Sbjct: 448 CINNNLDEPSNLKHFREMLDYYSSHNVTISEDDLKNFSLVLCT-HVAKVNEKTNSIFRTY 506

Query: 462 KIQNVCVFFSFSLL 503
           ++    V  SF LL
Sbjct: 507 EVHGCEVCNSFCLL 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,182
Number of Sequences: 5004
Number of extensions: 48005
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)