Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6096
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0704 + 35641774-35642031,35642122-35642446,35642546-356426...    29   2.9  
01_07_0316 - 42696640-42697361,42697505-42697733                       28   9.0  
01_01_0256 - 2083973-2084816,2084922-2086093                           28   9.0  

>03_06_0704 +
           35641774-35642031,35642122-35642446,35642546-35642699,
           35643662-35643706,35644121-35644180,35644532-35644694,
           35645356-35645717,35645985-35646303
          Length = 561

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +3

Query: 603 SSGSLNLPPDRNRDLRRKPETQWVKRVRCIEHFNEMHCIRKST 731
           SS S ++PP+R R L +KP+     ++   EH N +  ++KS+
Sbjct: 172 SSSSASVPPERPRALEKKPKL----KIEQKEHQNLIQSVKKSS 210


>01_07_0316 - 42696640-42697361,42697505-42697733
          Length = 316

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 159 RHNCLLLPDNRCPSSCFHTC 218
           +  C+   D RCP+ C H C
Sbjct: 59  KKGCMAKCDKRCPNQCMHLC 78


>01_01_0256 - 2083973-2084816,2084922-2086093
          Length = 671

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 591 GPNKSSGSL-NLPPDRNRDLRRKPETQWVKRVRCIEHFNEM 710
           G   S+ SL NLPP R R   R P+++   +V   +HF +M
Sbjct: 278 GSTSSAPSLSNLPPIRVRPEDRPPDSRLAPQVPVEDHFAQM 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,635,413
Number of Sequences: 37544
Number of extensions: 261019
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)