Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6096
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    29   4.6  

>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 102 KCVCVCNISCRSNC*IKYIRHNCLLLPDNRCPSSC 206
           KC+  C+ +CRS+C  +  +  C     N C S C
Sbjct: 162 KCMSTCSDTCRSSCSNRVSQSTCDATCQNTCSSMC 196


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 102 KCVCVCNISCRSNC*IKYIRHNCLLLPDNRCPSSC 206
           +C+ VC  SC + C  K+ + +C  + +++C ++C
Sbjct: 629 ECIPVCEQSCNTQCVEKFPQEHCGSVCNSQCQTAC 663


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +3

Query: 102 KCVCVCNISCRSNC*IKYIRHNCLLLPDNR--CPSSCFHTC 218
           +CV  C  SC S+C ++  + + +++ D++  CPS+C  +C
Sbjct: 354 QCVQACLPSCESSC-VQQQQPSVVVVQDSQSSCPSACQPSC 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,697,126
Number of Sequences: 27780
Number of extensions: 269864
Number of successful extensions: 565
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)