Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6094
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    34   0.012
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   3.3  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   7.5  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   10.0 
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    25   10.0 
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    25   10.0 
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   10.0 

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -1

Query: 209 HERSIRNYDFPFLVDRLDLINLNIPSGQWYRVQY 108
           H   IR YD P+      LI+LNI  GQWY V Y
Sbjct: 220 HVLDIREYDVPY--HSRTLIDLNIRVGQWYTVSY 251


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +1

Query: 241 SKRASVKNILI-QFYHSVISFNLEIELKIF--SCLV*YTLMCDRFV 369
           SK +  K +LI +   S ISF + I +K+F  S +V + L+C   V
Sbjct: 5   SKFSVTKRLLILEVLFSAISFGISIYIKVFGRSSIVTFFLLCFHLV 50


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -1

Query: 329  LKIFNSISKLKEITL**NCIKIFLTDAR--FDLLTTKRHLYCHERSIRN 189
            L+++N++SK  E+    + IK  + ++    + L  KR L+ HE ++RN
Sbjct: 1169 LRLYNALSKNYEMN---SDIKDCIVESNESMNYLLLKRFLFTHESTLRN 1214


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 121 IGYSTVDDSTSSKLITDFIRIDVVNLRV 38
           +G STVD ST+   +T+F   D  NL +
Sbjct: 584 LGLSTVDVSTTDVRLTNFEFFDANNLDI 611


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 96  VHHLSSLPTLYVLTLSICECNPSNLKPSKQS 4
           V +LSS   +++LTL     N  N +P K S
Sbjct: 306 VFYLSSWSLVFLLTLPATTINRENFQPLKSS 336


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 319 LTQSLN*KKLHCDKTVLKYF*PTRASIY 236
           L +S+  + +HC++ +LK F P     Y
Sbjct: 213 LPESIKARSMHCEELILKDFIPKEEHTY 240


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 120 SGTVQLTTVHHLSSLPTLYVLTLSICECN 34
           SGTV  T  + +SS P   V+ +    CN
Sbjct: 366 SGTVATTITYDVSSTPASTVVVIPTAVCN 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,305
Number of Sequences: 5004
Number of extensions: 38831
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)