Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6089
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    25   3.1  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    24   7.1  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    24   7.1  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    24   7.1  

>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 85  ISRTPPTNVFLVSPFCFICQIFEVIYSVLGTKVSNFYNP 201
           +  +P  +++++  FC   Q+ +   + L T + N YNP
Sbjct: 345 VQLSPKRDLYILRVFCLAEQLAD---AALNTNIENMYNP 380


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 206 LSGL*KLDTLVPNTEYITSNI*QIKQ 129
           L G   LD  VPNTEY  S+  +I++
Sbjct: 154 LRGEAPLDIKVPNTEYYASHFPKIEE 179


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 121 TLKTHLLAAFVKSRPYRVDGAVGLTGNTMI 32
           T K   ++ + +S PYRVD   GL    M+
Sbjct: 143 TKKISAVSTYFESMPYRVDPNTGLIDYDML 172


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 239 LSFRRQQQKVSNLDIKLICEENAHS 313
           L F++   KVSN D++++ +   HS
Sbjct: 302 LQFKKLNAKVSNFDVQVLRDGAVHS 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,401,386
Number of Sequences: 5004
Number of extensions: 24161
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)