Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6089
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1043 - 29898829-29898930,29899174-29899234,29899638-298997...    31   0.41 
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465...    29   1.3  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    27   3.8  
07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609     26   8.9  

>03_05_1043 -
           29898829-29898930,29899174-29899234,29899638-29899744,
           29899839-29899943,29900184-29900270,29900553-29900633,
           29900834-29900906,29901120-29901232,29901781-29901874,
           29902032-29902087,29902171-29902254,29902550-29902642,
           29902751-29902924,29903033-29903146,29903404-29903490
          Length = 476

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +1

Query: 22  HLYRSSYFQSVQQHRQRG 75
           HLYR  Y   VQ HRQRG
Sbjct: 173 HLYRMDYMDFVQSHRQRG 190


>02_01_0622 -
           4658133-4658150,4658269-4658337,4658436-4658462,
           4658808-4658873,4658954-4659076,4659562-4659629,
           4659703-4659766,4659994-4660135,4660218-4660306,
           4660574-4660637,4660870-4661021,4661124-4661261,
           4661742-4661867,4661971-4662183,4662343-4662426,
           4662583-4662742,4662993-4663126,4664047-4664136,
           4664313-4664471,4665528-4665611,4666170-4666289,
           4666338-4666391,4666899-4666945,4667556-4667598,
           4667730-4668586,4668845-4668899
          Length = 1081

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 21  APLPIIVFPVSPTAPST 71
           APLP +V P+SP+AP+T
Sbjct: 136 APLPSVVSPLSPSAPNT 152


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 43  FQSVQQHRQRGTAAISRTPPTNVFLVSP 126
           FQS+ Q R+ GT  I   PP+  F V P
Sbjct: 372 FQSMYQKRRLGTLGIEWRPPSVNFAVGP 399


>07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609
          Length = 475

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 88  SRTPPTNVFLVSPFCFICQIFEVIYSVLGTKV 183
           SR  P  V L +P+C  CQ  E  Y  L  ++
Sbjct: 379 SRAEPWLVVLYAPWCPFCQAMEASYLELAERL 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,587,196
Number of Sequences: 37544
Number of extensions: 142276
Number of successful extensions: 306
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)