Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6088
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    44   2e-05
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.7  
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         27   3.0  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.9  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    26   6.8  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   9.0  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    25   9.0  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   9.0  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   9.0  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   9.0  

>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 24/82 (29%), Positives = 42/82 (51%)
 Frame = +1

Query: 244 LNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSV 423
           +NG++++Y N   L+    +  D+      V+ D  +F P  G  L G +N    +H+ +
Sbjct: 44  INGIVLAYDNIRFLEKSAKVMYDSPFSFIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGL 103

Query: 424 LVHRVFNVVIPQPTEEPGDKWI 489
           L+  +FN  IP+ +  P D WI
Sbjct: 104 LILGIFNASIPRKS-IPKD-WI 123


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = +1

Query: 490 GSSVKEGQEVTFRIAALDLYGALPYIRGELDERSLKLEN------YEIDEDIEVSQPLSV 651
           G+SV E      RIA     G+   +   ++ RS++ EN      Y +D+DIE  QPL  
Sbjct: 367 GNSVGEDTNALVRIAT----GSAGEMYVNVETRSIQSENIGNVSLYVLDKDIEPPQPLLS 422

Query: 652 PYVIFDKTKPTVK 690
             ++ D+   +V+
Sbjct: 423 QLILVDEISFSVR 435


>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 181 GNIKESITNLLDYKVGKFDKELNGVLVSYKNPCILQNV--GTIRNDNADIHFQ 333
           G + +     LD+ VG+  K  NGV+ +YK   I + V   T    + D HFQ
Sbjct: 299 GVVSDMFGKPLDFGVGRTLKNNNGVIAAYKG--IFEKVIEATAAVTSKDPHFQ 349


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 113 FANCFNSRRSNFMILDI 63
           F NCF +R SN+M+L I
Sbjct: 167 FVNCFKTRLSNWMLLPI 183


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 544 LYGALPYIRGELDERSLKLENYEIDEDIEVS 636
           LY       GELDE +LKL   + D D EV+
Sbjct: 515 LYSPSKQPSGELDEENLKLRLQDSDVDDEVA 545


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 283 LQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFNVVIPQ 459
           L  +G I  D    +F V A   I     G   +G+++KK    + + +  V NVV+P+
Sbjct: 322 LHQLGYIHRDLKPENFLVGASGHIKLTDFGLS-SGIISKKKIESMKIRLQEVNNVVVPE 379


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/65 (23%), Positives = 35/65 (53%)
 Frame = +1

Query: 64  MSKIIKFDLRELKQLANDKNSCLVVKKITQNLALQPWCLGNIKESITNLLDYKVGKFDKE 243
           + ++   ++++   +  + N  LV K+  + + L    L N  ES+T+ ++ ++ KFD +
Sbjct: 110 LCRLANLEMQKELSIEVNMNVTLVQKQFLEMVILH---LRNF-ESVTDKMNQRIDKFDGK 165

Query: 244 LNGVL 258
            N V+
Sbjct: 166 FNSVI 170


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 315 CGYTFPSSSGLLHISTIH 368
           C +TFP+  G +H+S I+
Sbjct: 172 CNFTFPTIQGSIHLSDIN 189


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 538 LDLYGALPYIRGELDERSLKLENY 609
           LDL   LPY  G L+++++ L++Y
Sbjct: 434 LDLRSQLPYSEGWLEDQTILLKSY 457


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 694 FILQ*A*FYQKSHKVHLMVEKLQYPHQFHSFLVLDSSHLIHL 569
           F+ + A F      VH +++ L  P ++H+FL    + L HL
Sbjct: 616 FVYRSALFAFNKSNVHEIIQLLNEPVKYHNFLKPSEALLQHL 657


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 73  IIKFDLRELKQLANDKNSCLVVKKITQNLA 162
           I+K D+  +K +A  K+ CL VK   QN++
Sbjct: 317 IMKPDVLFIKSIAVLKSKCLAVKSSLQNIS 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,791
Number of Sequences: 5004
Number of extensions: 57338
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)