Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6088
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0283 - 2095291-2095566,2095962-2096348,2096523-2096881,209...    29   4.1  
04_03_0511 - 16664923-16665509,16665600-16665902,16665954-16666218     29   4.1  
05_03_0621 - 16291770-16291786,16292847-16293207                       28   9.4  

>11_01_0283 -
           2095291-2095566,2095962-2096348,2096523-2096881,
           2097275-2097398,2097480-2097548,2098536-2098584,
           2099185-2099299,2099823-2099872,2099969-2100106,
           2101136-2101197,2102066-2102180,2103433-2103664,
           2103748-2103826,2103925-2103993,2104079-2104171,
           2104577-2104622,2105223-2105268,2105354-2105411,
           2105577-2105615,2105712-2105783,2105930-2106021,
           2106824-2106923
          Length = 889

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 424 LVHRVFNVVIPQPTEEPGDKWIGSSVKEGQEVTFRIAA 537
           L+H+V + +  +P  E G      S KE Q V+FR AA
Sbjct: 446 LLHKVRSEIEKKPEAEDGKDTQSRSTKEDQAVSFRTAA 483


>04_03_0511 - 16664923-16665509,16665600-16665902,16665954-16666218
          Length = 384

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 550 GALPYIRGELDERSLKLENYEIDEDIEVSQPLSVPYV 660
           G LP   G +DE S  L NY++ ++I +S  L +P V
Sbjct: 30  GDLPLSPGVMDEASRVLGNYDLLKEILLSLGLHIPLV 66


>05_03_0621 - 16291770-16291786,16292847-16293207
          Length = 125

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 292 VGTIRNDNADIHFQVQADYFIFQP 363
           + TIR D+ D H ++ ADYF   P
Sbjct: 58  IKTIRRDHVDAHSRLVADYFAEHP 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,253,744
Number of Sequences: 37544
Number of extensions: 305159
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)