Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6088
         (769 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130300-1|AAI30301.1|  338|Homo sapiens TWIST neighbor protein.      114   3e-25
BC130298-1|AAI30299.1|  338|Homo sapiens TWIST neighbor protein.      114   3e-25
BC014574-1|AAH14574.1|  226|Homo sapiens TWISTNB protein protein.     114   3e-25

>BC130300-1|AAI30301.1|  338|Homo sapiens TWIST neighbor protein.
          Length = 338

 Score =  114 bits (275), Expect = 3e-25
 Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 1/175 (0%)
 Frame = +1

Query: 106 LANDKNSCLVVKKITQNLALQPWCLGNIKESITNLLDYKVGKFDKELNGVLVSYKNPCIL 285
           L N + SCLV     +++AL P  L   +  I   LD ++ ++ + L GV ++Y N  ++
Sbjct: 40  LVNSRYSCLVAGPHQRHIALSPRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVV 99

Query: 286 QNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFNVVIPQPT 465
             +G I +D   IH  ++AD+ IF P  G KL G+VNK  S+H+  LVH  FN  IP+P 
Sbjct: 100 GELGDIYDDQGHIHLNIEADFVIFCPEPGQKLMGIVNKVSSSHIGCLVHGCFNASIPKPE 159

Query: 466 EEPGDKWIGSSVKEGQEVTFRIAALDLYGALPY-IRGELDERSLKLENYEIDEDI 627
           +   ++W    +  G E+ F +  LD   A  + IRG+L+  SL+ +  E+ E++
Sbjct: 160 QLSAEQWQTMEINMGDELEFEVFRLDSDAAGVFCIRGKLNITSLQFKRSEVSEEV 214


>BC130298-1|AAI30299.1|  338|Homo sapiens TWIST neighbor protein.
          Length = 338

 Score =  114 bits (275), Expect = 3e-25
 Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 1/175 (0%)
 Frame = +1

Query: 106 LANDKNSCLVVKKITQNLALQPWCLGNIKESITNLLDYKVGKFDKELNGVLVSYKNPCIL 285
           L N + SCLV     +++AL P  L   +  I   LD ++ ++ + L GV ++Y N  ++
Sbjct: 40  LVNSRYSCLVAGPHQRHIALSPRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVV 99

Query: 286 QNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFNVVIPQPT 465
             +G I +D   IH  ++AD+ IF P  G KL G+VNK  S+H+  LVH  FN  IP+P 
Sbjct: 100 GELGDIYDDQGHIHLNIEADFVIFCPEPGQKLMGIVNKVSSSHIGCLVHGCFNASIPKPE 159

Query: 466 EEPGDKWIGSSVKEGQEVTFRIAALDLYGALPY-IRGELDERSLKLENYEIDEDI 627
           +   ++W    +  G E+ F +  LD   A  + IRG+L+  SL+ +  E+ E++
Sbjct: 160 QLSAEQWQTMEINMGDELEFEVFRLDSDAAGVFCIRGKLNITSLQFKRSEVSEEV 214


>BC014574-1|AAH14574.1|  226|Homo sapiens TWISTNB protein protein.
          Length = 226

 Score =  114 bits (275), Expect = 3e-25
 Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 1/175 (0%)
 Frame = +1

Query: 106 LANDKNSCLVVKKITQNLALQPWCLGNIKESITNLLDYKVGKFDKELNGVLVSYKNPCIL 285
           L N + SCLV     +++AL P  L   +  I   LD ++ ++ + L GV ++Y N  ++
Sbjct: 40  LVNSRYSCLVAGPHQRHIALSPRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVV 99

Query: 286 QNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFNVVIPQPT 465
             +G I +D   IH  ++AD+ IF P  G KL G+VNK  S+H+  LVH  FN  IP+P 
Sbjct: 100 GELGDIYDDQGHIHLNIEADFVIFCPEPGQKLMGIVNKVSSSHIGCLVHGCFNASIPKPE 159

Query: 466 EEPGDKWIGSSVKEGQEVTFRIAALDLYGALPY-IRGELDERSLKLENYEIDEDI 627
           +   ++W    +  G E+ F +  LD   A  + IRG+L+  SL+ +  E+ E++
Sbjct: 160 QLSAEQWQTMEINMGDELEFEVFRLDSDAAGVFCIRGKLNITSLQFKRSEVSEEV 214


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,933,781
Number of Sequences: 237096
Number of extensions: 1835021
Number of successful extensions: 3346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3346
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)