Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6087
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   1.0  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    27   1.0  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   4.1  
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc...    25   5.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   5.4  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    24   7.1  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    24   7.1  

>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 233 DGLQQPLNTRWAVSSSTRLSNNKNKKMTTTVICELMTN 346
           D  Q+P N  +A   +  L  N NKKMT   ICE + N
Sbjct: 287 DATQKP-NLSYANLIARTLIANPNKKMTLGDICEWIAN 323


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 170 RCDYTETLKLISQGVWGIYVVDGLQQPLNTRWAVSSSTRLSNNKN 304
           R +  +  K+ + G+W +Y  DG Q+P  T  A+S +  L++ +N
Sbjct: 197 RIEGKKVAKVDASGLWKLYTRDGKQEPNAT--AISLADMLADFQN 239


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 275 SSTRLSNNKNKKMTTTVICELMTNYRIMF 361
           S  ++ N KNK   T  + + + NYRI++
Sbjct: 124 SKQKIKNGKNKWSLTFKLTQNLYNYRILY 152


>SPBC26H8.05c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 11  SLNIWRYFNEI*QSL*SFLLVVGPLVSPHG*VPP 112
           S N+WRY  EI   L    LV G +   HG + P
Sbjct: 135 SANVWRYCCEIFDYLSLGALVDGKVFCVHGGLSP 168


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 105 TYPCGLTRGPTTSKNDHN 52
           TYPC     P+ SK D N
Sbjct: 381 TYPCSSLPSPSISKKDEN 398


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 96  CGLTRGPTTSKNDHNDCHISLKYRQMFKLGT 4
           CG T GP  +      C + L+ R   + GT
Sbjct: 475 CGFTTGPQGTPTHWKQCVLLLRNRPFLQKGT 505


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 168 LPHTSNRNALLLHGRNK 118
           LP+T N   L LHG N+
Sbjct: 198 LPYTGNSRGLYLHGLNR 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,569,693
Number of Sequences: 5004
Number of extensions: 29503
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)