Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6087
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0080 + 12024505-12024942                                         29   0.95 
12_02_0380 - 18356210-18356329,18356415-18356673,18356754-183569...    28   2.9  
04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741...    27   3.8  
06_03_1126 + 27805982-27806475,27806617-27807202                       27   5.1  
04_01_0174 - 1960817-1960830,1962052-1962108,1962255-1962324,196...    27   6.7  

>08_02_0080 + 12024505-12024942
          Length = 145

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 230 VDGLQQPLNTRWAVS-SSTRLSNNKNKKMTTTVICELMT 343
           V G  + L+  W +S S + +SN    KMT+T++C   T
Sbjct: 40  VSGTSKILSMGWPISMSKSEMSNRWKSKMTSTLLCHTGT 78


>12_02_0380 -
           18356210-18356329,18356415-18356673,18356754-18356917,
           18357235-18357397,18357465-18359020
          Length = 753

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 96  CGLTRGPTTSKNDHNDCHISLKYRQMF 16
           C L+ G  T   D N CH++L+  Q F
Sbjct: 541 CALSSGAITLMMDANGCHVALRCLQKF 567


>04_03_0618 -
           18071612-18072795,18073007-18073072,18074101-18074175,
           18074234-18074963
          Length = 684

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -2

Query: 299 CYCLDVWTSSQPTWC*VVAE-AHLQRKCPTHLEI*VLRSQYSHNGCPTLQTETHYCFTAE 123
           C CL + + S+PT C +  E   ++++   H  +    S  S     +  T  H  FT E
Sbjct: 608 CQCLAMTSESRPTMCRIAEELRRIEKRVRQHRGVLTTISSMSLLASSSADTSLH--FTGE 665

Query: 122 ISG 114
            +G
Sbjct: 666 TNG 668


>06_03_1126 + 27805982-27806475,27806617-27807202
          Length = 359

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 156 SNRNALLLHGRNKRGGGTYPCGLTRGPTTSKNDHN 52
           S+  A   H  + RGGG + C  T  P T+ N H+
Sbjct: 221 SSHAAAQQHRHHHRGGGGF-CCFTSNPETTSNGHS 254


>04_01_0174 -
           1960817-1960830,1962052-1962108,1962255-1962324,
           1962352-1962501,1964338-1964487,1964751-1964798,
           1964930-1964956,1965243-1965319,1965423-1965525,
           1966399-1966529,1967499-1967676,1968886-1968945
          Length = 354

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 81  GPTTSKNDHNDCHISLKYRQMFK 13
           GP +++  HN+CH SL   + F+
Sbjct: 307 GPVSTRQLHNECHFSLFKEENFE 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,378,272
Number of Sequences: 37544
Number of extensions: 200586
Number of successful extensions: 371
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)