Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6087
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    29   0.85 
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    29   0.85 
U97008-14|AAB52302.2|  298|Caenorhabditis elegans Serpentine rec...    28   2.6  
Z68218-3|CAA92473.1|  325|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AL032656-4|CAB60309.2|  407|Caenorhabditis elegans Hypothetical ...    27   6.0  

>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 147 NALLLHGRNKRGGGTYPCG 91
           +A L+ GRNKR GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 147 NALLLHGRNKRGGGTYPCG 91
           +A L+ GRNKR GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>U97008-14|AAB52302.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein56 protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 382 FGSFXLLKHYSIICH*FTYDGSSHFFIFVIA*TCG 278
           F SF  +  Y   C+ + YD +S FF+F     CG
Sbjct: 130 FISFVAILFYEKFCYIY-YDSASRFFVFTATEFCG 163


>Z68218-3|CAA92473.1|  325|Caenorhabditis elegans Hypothetical
           protein K01H12.3 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 195 FKVSV*SQRLPHTSNRNALLLHGRNKRGGGTYPC 94
           F+ SV  Q++   SNR   ++H   KRGG    C
Sbjct: 27  FRRSVSDQKVYSCSNRQCSIVHDPTKRGGSCRFC 60


>AL032656-4|CAB60309.2|  407|Caenorhabditis elegans Hypothetical
           protein Y106G6E.6 protein.
          Length = 407

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 159 TSNRNALLLHGRNKRGGGTYPCGLTRGPTTSKNDHNDCHISLKYRQM 19
           T+N   +L+ G N + G    CG        KN +N+ H+++K   M
Sbjct: 15  TTNSQGVLMVGPNFKVGKKIGCGNFGELRLGKNLYNNEHVAIKLEPM 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,890,286
Number of Sequences: 27780
Number of extensions: 174670
Number of successful extensions: 369
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)