Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6087
         (384 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   2.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   2.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   6.5  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 66  KNDHNDCHISLKYRQMF 16
           KND N  +IS KY+++F
Sbjct: 107 KNDDNFRNISEKYQEIF 123


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -1

Query: 132 HGRNKRGGGTYPCGLTRGPTTSKNDHNDCHIS 37
           HG       TY     + P T KN H  C ++
Sbjct: 128 HGTGNSRANTYNFDYPQVPYTVKNFHPRCAVN 159


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -1

Query: 159  TSNRNALLLHGRNKRGGGTYPCGLTRGPTTSKNDHNDCHIS 37
            +S  +++LLH ++   GG    G T    T+  + ++  +S
Sbjct: 1414 SSTSSSILLHWKSGHNGGASLTGYTLHYRTAHGNLDELQLS 1454



 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 239  LQQPLNTRWAVSSSTRLSNNKNKKMTTTV 325
            LQQ +  ++ V+ STR+   ++ K+   V
Sbjct: 1279 LQQHVEYQFWVTGSTRVGEGQSSKVAAQV 1307


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -1

Query: 159  TSNRNALLLHGRNKRGGGTYPCGLTRGPTTSKNDHNDCHIS 37
            +S  +++LLH ++   GG    G T    T+  + ++  +S
Sbjct: 1410 SSTSSSILLHWKSGHNGGASLTGYTLHYRTAHGNLDELQLS 1450



 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 239  LQQPLNTRWAVSSSTRLSNNKNKKMTTTV 325
            LQQ +  ++ V+ STR+   ++ K+   V
Sbjct: 1275 LQQHVEYQFWVTGSTRVGEGQSSKVAAQV 1303


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 271 HSPPGVKWLLKPIYNVNAPHTLRYK 197
           H+    KW    I N N  +T +YK
Sbjct: 122 HTSDQHKWFQMSINNTNNNNTNKYK 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,942
Number of Sequences: 438
Number of extensions: 2330
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)