Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6086
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   4.3  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   7.5  

>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 647 PHGPYSKYILTHKIISLIKVKQDYIEY 727
           PH  +S +I  H IIS +K+   Y  Y
Sbjct: 3   PHTAFSNHIHYHFIISFMKMNDSYTPY 29


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 490 IAKSFKHKIKGKILNVHVIRIQWDKKWRKFSSNFSEN 600
           I+  F H  K   L VH   ++W    +  +S ++EN
Sbjct: 247 ISSIFVHPFKDPSLLVHFTGLKWSTLMKNLASAYTEN 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,672
Number of Sequences: 5004
Number of extensions: 64972
Number of successful extensions: 157
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)