Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6086
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83...    28   7.8  
02_05_0138 - 26190110-26191038,26191123-26191221,26191388-261915...    28   7.8  

>05_01_0121 -
           833885-833949,834180-834430,834545-834604,834893-834926,
           835746-835805,836409-836509,836939-837039,837209-837289,
           837580-837650,837738-837849,838138-838173,838865-838951,
           839055-839396
          Length = 466

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 658 WSMWFLFGFEIFNSCMYFTSFLRNWKKTFSTF 563
           + ++ L G E++  C   T  ++ W++TF++F
Sbjct: 318 FGLFHLGGDEVYTGCWNATPHVKQWEETFNSF 349


>02_05_0138 -
           26190110-26191038,26191123-26191221,26191388-26191518,
           26191622-26191756,26191836-26191933,26192747-26192919,
           26193027-26193411
          Length = 649

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 688 YFMCENIFAIWSM--WFLFGFEIFNSCMYFTSFLRNWKKTFSTFYPIGFV 545
           +  C  I  +WS   WF  G E      + T  L+ WK+TF   + + +V
Sbjct: 225 FLNCFGISLLWSFFQWFYTGGESCGFLQFPTFGLKAWKQTFYFDFSLTYV 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,784,734
Number of Sequences: 37544
Number of extensions: 304639
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)