Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6086
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z48230-1|CAA88262.2|  587|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical
           protein Y53G8B.2 protein.
          Length = 340

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
 Frame = -2

Query: 805 WELIREGLRAKKEYFQIV--FDLSLPYIIFDIVLFHFD*TDYFMCENIFAIWSMWFLFGF 632
           W  +   ++ KK Y  +V  F L+ P  +F  +L  F    +    +I A+++ W+ +  
Sbjct: 9   WVDLFSSIQRKKTYLGVVYHFMLTYPLALFVTILPFF--LLFTFQWHILALYACWYFYDM 66

Query: 631 EIFNSCMYFTSFLRNWKKT--FSTFYPI 554
           +      Y + ++R W+    F+ ++PI
Sbjct: 67  DSPRRGGYSSDWVRKWRVNDWFAQYFPI 94


>Z48230-1|CAA88262.2|  587|Caenorhabditis elegans Hypothetical
           protein F42G10.1 protein.
          Length = 587

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 579 FFQFLRKLVKYIHELKISNPKRNHMDHIANIFSHIK 686
           F++ L+  V+Y+ ELKI    RNH  H   +F  I+
Sbjct: 139 FYKSLKLSVEYLTELKIPISTRNHFYH--GLFDEIR 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,561,179
Number of Sequences: 27780
Number of extensions: 340826
Number of successful extensions: 809
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)