Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6085
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   2.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   3.7  

>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 98  SLHKGVAGSNPAKGRYLYDKYKCLFQGYGCILNICMCIIKILHLY 232
           SLH G A        +++ +Y+  F GY  +L +C C + + H Y
Sbjct: 253 SLHAGWAMLEALFLSHVFPRYRFCFYGY--VLWLCWCTMYLTHHY 295


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = +2

Query: 110 GVAGSNPAKGRYLYDKYKCLFQGYGCILNICMCIIKILHLYPLSGTCNTSSLRTY 274
           GV   +  K   LYD  +C      C  +I   I K L L P  GTC    LRTY
Sbjct: 627 GVIAFHGLKESVLYDIARC------CRADIISSIDK-LSLCPRLGTCGRFQLRTY 674


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,207
Number of Sequences: 5004
Number of extensions: 54975
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)