Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6083
(470 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 32 0.20
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458... 29 1.4
07_03_1107 - 24024387-24024497,24025799-24026410 29 1.4
07_01_0975 + 8223269-8224354 29 1.9
04_04_1012 - 30104401-30104955,30105066-30106841 29 1.9
04_04_1005 - 30043698-30044252,30044363-30046138 29 1.9
03_02_0504 - 8976973-8979414 29 1.9
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291... 29 1.9
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026... 29 2.5
06_01_1169 + 9996068-9996265,9996356-9998589,9998675-9998926,999... 25 2.9
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 28 4.4
09_04_0149 - 15108796-15109353,15109590-15110756,15111571-151116... 27 5.8
02_05_0686 - 30900748-30902167,30903442-30904742 27 5.8
02_01_0595 + 4420112-4420401,4420518-4420607,4421883-4421931,442... 27 5.8
11_06_0610 - 25449085-25453284 27 7.6
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 27 7.6
07_01_1000 - 8439183-8439824 27 7.6
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849... 27 7.6
02_05_0814 - 31970558-31971126,31971242-31971413 27 7.6
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 32.3 bits (70), Expect = 0.20
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -3
Query: 339 PSASTLMAQANPPRQSKKVQPTPAPRGRTSAGAPTISRPTSGITTL 202
P A+ Q NPPR + P P PR R P S P + + L
Sbjct: 207 PMAAPAPPQTNPPRPVRPPPPPPPPRQRLLRPLPAESPPPAALANL 252
>08_01_0527 +
4580599-4580818,4580933-4581806,4581891-4581955,
4582055-4582110,4582955-4583058,4583310-4583382,
4583474-4583654,4584537-4584622
Length = 552
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 309 NPPRQSKKVQPTPAPRGRTSAG 244
+PPRQ ++ Q TP+P+G AG
Sbjct: 171 SPPRQRRRRQDTPSPKGSEVAG 192
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 339 PSASTLMAQANPPRQSKKVQPTPAPRGRTSAGAPTISRPT 220
P+ +T A + PP + TPAP + APT + PT
Sbjct: 50 PTTTTPPAASTPPAAAPTTPATPAPAEAPTTPAPTKAPPT 89
>07_01_0975 + 8223269-8224354
Length = 361
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 339 PSASTLMAQANPPRQSKKVQPTPAPRGRTSAGAPTISRPTSG 214
PS+S + + P S P+ +P G + AG PT P SG
Sbjct: 248 PSSSPSSSPSGSPSSSPSGSPSGSPAG-SPAGGPTAGGPASG 288
>04_04_1012 - 30104401-30104955,30105066-30106841
Length = 776
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 113 RCLQCRILHHNQPTQRTWRSQKTPLRP 33
R L+ R H+QPT+R+ R K P RP
Sbjct: 664 RRLKIRTRQHSQPTRRSERIAKQPARP 690
>04_04_1005 - 30043698-30044252,30044363-30046138
Length = 776
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 113 RCLQCRILHHNQPTQRTWRSQKTPLRP 33
R L+ R H+QPT+R+ R K P RP
Sbjct: 664 RRLKIRTRQHSQPTRRSERIAKQPARP 690
>03_02_0504 - 8976973-8979414
Length = 813
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 113 RCLQCRILHHNQPTQRTWRSQKTPLRP 33
R L+ R H+QPT+R+ R K P RP
Sbjct: 701 RRLKIRTRQHSQPTRRSERIAKQPARP 727
>02_05_1131 -
34328168-34328557,34328838-34328957,34329067-34329185,
34329659-34329767,34329847-34329885,34341125-34341203,
34341483-34341547,34341850-34341905,34342141-34342233,
34342312-34342579
Length = 445
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 342 LPSASTLMAQANPPRQSKKVQPTPAPRGRTSAGAPTISR 226
L S L A PP + +V+PT +P +SA A ISR
Sbjct: 38 LESQLRLGAAPLPPSAAAEVEPTGSPSSSSSAAADMISR 76
>12_02_0410 +
18701258-18701327,18701398-18701630,18701782-18702639,
18703006-18703865,18704285-18704395,18704486-18704567,
18704643-18704735,18704795-18704989
Length = 833
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 342 LPSASTLMAQANPPRQSKKVQPTPAPRGRTSAGAPTISRP 223
LP S L + PP+Q+ PTP PR + A ++ P
Sbjct: 464 LPQISPLRGPSPPPQQAAPNSPTPLPRQPSLAPQSYLAPP 503
>06_01_1169 +
9996068-9996265,9996356-9998589,9998675-9998926,
9999007-9999117,9999207-9999288,9999563-9999754
Length = 1022
Score = 24.6 bits (51), Expect(2) = 2.9
Identities = 11/34 (32%), Positives = 12/34 (35%)
Frame = -3
Query: 114 PVPTVQNSAPQPTDPENMEVTENSTPAHTIPSQP 13
P+PT Q PT P P T P P
Sbjct: 606 PLPTPQPVQASPTSPTKQHAPPAPPPVQTSPPTP 639
Score = 22.2 bits (45), Expect(2) = 2.9
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -3
Query: 306 PPRQSKKVQPTPAPRGRTSAGAPT 235
PP +S QPTP P PT
Sbjct: 586 PPLRSPPRQPTPPPSPSQQPPLPT 609
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = -3
Query: 339 PSASTLMAQANPPRQSKKVQPTPAPRGRTSAGAPTISRPTSG 214
P +TL PP+ S KV P P P A P IS SG
Sbjct: 71 PPPTTLTPTPMPPKASPKVAPLPPP---AEAVIPPISLGNSG 109
>09_04_0149 -
15108796-15109353,15109590-15110756,15111571-15111640,
15113747-15113808
Length = 618
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 212 MPLVGRDIVGAPAEVRPRGAGVGWTFFDCRGGLACAISVDADGSASTTTAD 364
+ ++GR I ++ A V W++ R G++C V++ G S D
Sbjct: 157 LKVIGRCIDAIASKTSVDPANVTWSYSHSRKGMSCTEIVESTGRTSIAPKD 207
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 339 PSASTLMAQANPPRQSKKVQPTPAPRGRTSAGAPTISRP 223
PS + A ++ PR S P PAP R ++ +P++ P
Sbjct: 255 PSTPAITAVSSVPRSSPS--PAPAPAARPASPSPSLPLP 291
>02_01_0595 +
4420112-4420401,4420518-4420607,4421883-4421931,
4423337-4424020
Length = 370
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 10 RGLAWYRMGRSGVFCDLHVLWVGW 81
R + MG SGV LH LW+ W
Sbjct: 265 RAALFLAMGLSGVVPALHALWLNW 288
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.1 bits (57), Expect = 7.6
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 339 PSASTLMAQANPPRQSKKVQ--PTPAPRGRTSAGAPTISRPTS 217
P ST A+ +PP K P PAP G T +P S P S
Sbjct: 607 PPKSTPPAEKSPPTPESKASSPPPPAPEGHTP--SPPESTPPS 647
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +1
Query: 70 WVGWLWCRILHCRHRN-VSVCIL 135
W GWLW R C H + S C++
Sbjct: 635 WGGWLWARWFACLHASRRSTCLV 657
>07_01_1000 - 8439183-8439824
Length = 213
Score = 27.1 bits (57), Expect = 7.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 271 CSPWSHFCWC 242
CS W FCWC
Sbjct: 12 CSSWKDFCWC 21
>04_03_0630 -
18182681-18182931,18183397-18183463,18184899-18184964,
18185057-18185178,18185263-18185425,18186082-18186329,
18186418-18186751,18186857-18187000,18187079-18187144
Length = 486
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 339 PSASTLMAQANPPRQSKKVQPTPAPRGRTSAGAPTIS 229
P S + ++ PP+Q K+V P P A APT S
Sbjct: 273 PQISAIPSRPAPPKQEKQVAPAPV---APVADAPTFS 306
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -3
Query: 114 PVPTVQN-SAPQPTDPENMEVTENSTPAHTIPSQPSC 7
P PT S P PT P T +T P+ P+C
Sbjct: 160 PTPTTPYPSTPMPTTPYPSTPMTTPTTPYTTPTSPAC 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,397,217
Number of Sequences: 37544
Number of extensions: 206214
Number of successful extensions: 1144
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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