Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6083
(470 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025460-2|AAF02169.3| 545|Caenorhabditis elegans Prion-like-(q... 31 0.32
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 30 0.73
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 30 0.73
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 30 0.73
Z81548-4|CAB04465.1| 916|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81503-5|CAB04114.1| 916|Caenorhabditis elegans Hypothetical pr... 29 2.2
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 2.2
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 2.2
Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p... 28 2.9
Z47356-5|CAA87418.1| 173|Caenorhabditis elegans Hypothetical pr... 28 2.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 3.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 3.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 3.9
Z81520-4|CAE17808.1| 181|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z78415-9|CAI58633.1| 685|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z78415-8|CAB01675.2| 765|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z50874-5|CAA90764.1| 305|Caenorhabditis elegans Hypothetical pr... 27 5.1
AY912076-1|AAX81408.1| 685|Caenorhabditis elegans extracellular... 27 5.1
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 27 6.8
U53335-4|AAL27231.1| 504|Caenorhabditis elegans Hypothetical pr... 27 6.8
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 27 6.8
>AF025460-2|AAF02169.3| 545|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 41
protein.
Length = 545
Score = 31.5 bits (68), Expect = 0.32
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 339 PSASTLMAQANPPRQSKKVQPTPAPRGRTSAGAP 238
PS+S+ +++PP K P+ PR TSA AP
Sbjct: 61 PSSSSHHKKSSPPHHQKSAAPSAPPRDVTSAHAP 94
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 30.3 bits (65), Expect = 0.73
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 120 DIPVPTVQNSAPQPTDPENMEVTENSTPAHT 28
D+P TVQ S PT P T +TP T
Sbjct: 494 DVPTTTVQTSTTVPTTPSKTTATTTTTPKPT 524
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 30.3 bits (65), Expect = 0.73
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 120 DIPVPTVQNSAPQPTDPENMEVTENSTPAHT 28
D+P TVQ S PT P T +TP T
Sbjct: 335 DVPTTTVQTSTTVPTTPSKTTATTTTTPKPT 365
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 30.3 bits (65), Expect = 0.73
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 120 DIPVPTVQNSAPQPTDPENMEVTENSTPAHT 28
D+P TVQ S PT P T +TP T
Sbjct: 375 DVPTTTVQTSTTVPTTPSKTTATTTTTPKPT 405
>Z81548-4|CAB04465.1| 916|Caenorhabditis elegans Hypothetical
protein F14F7.5 protein.
Length = 916
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 342 LPSASTLMAQANPPRQSKKVQPTPAPRGRTSAGAPTISRPTSGITTL 202
+P A+ L + A P QS QP P PRG + S P + +L
Sbjct: 780 IPPATPLSSPA-PSNQSPPSQPQPGPRGSSPPAPSAPSAPETDTNSL 825
>Z81503-5|CAB04114.1| 916|Caenorhabditis elegans Hypothetical
protein F14F7.5 protein.
Length = 916
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 342 LPSASTLMAQANPPRQSKKVQPTPAPRGRTSAGAPTISRPTSGITTL 202
+P A+ L + A P QS QP P PRG + S P + +L
Sbjct: 780 IPPATPLSSPA-PSNQSPPSQPQPGPRGSSPPAPSAPSAPETDTNSL 825
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 114 PVPTVQNSAPQPTDPENMEVTENSTPAHTIPSQP 13
P P VQ SA + PE M+ +E +T A PS P
Sbjct: 564 PTPQVQISAQEAAIPEKMDTSEAATAARP-PSTP 596
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 114 PVPTVQNSAPQPTDPENMEVTENSTPAHTIPSQP 13
P P VQ SA + PE M+ +E +T A PS P
Sbjct: 564 PTPQVQISAQEAAIPEKMDTSEAATAARP-PSTP 596
>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical protein
C38D9.5 protein.
Length = 1213
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 388 PSLFPLRSVCXXXXGTAIGVYADGTGQ-PATAVKESPTY 275
P LR VC + +GVY DGTG PAT KE P+Y
Sbjct: 1070 PEWATLRIVC-----SQLGVY-DGTGDFPATNPKEGPSY 1102
>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 388 PSLFPLRSVCXXXXGTAIGVYADGTGQ-PATAVKESPTY 275
P LR VC + +GVY DGTG PAT KE P+Y
Sbjct: 1070 PEWATLRIVC-----SQLGVY-DGTGDFPATNPKEGPSY 1102
>Z47356-5|CAA87418.1| 173|Caenorhabditis elegans Hypothetical
protein T15H9.5 protein.
Length = 173
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 111 VPTVQNSAPQPTDPENMEVTENSTPAHTIPS 19
V VQN+ P+P P M + E+ + +PS
Sbjct: 23 VQNVQNTQPKPAAPSQMSIDESHSKNQKLPS 53
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 306 PPRQSKKVQPTPAPRGRTSAGAPTISRPTSG 214
PPRQ ++ P G G+P RP G
Sbjct: 332 PPRQKRQAPERSPPTGSPPTGSPPTGRPPRG 362
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 306 PPRQSKKVQPTPAPRGRTSAGAPTISRPTSG 214
PPRQ ++ P G G+P RP G
Sbjct: 353 PPRQKRQAPERSPPTGSPPTGSPPTGRPPRG 383
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 306 PPRQSKKVQPTPAPRGRTSAGAPTISRPTSG 214
PPRQ ++ P G G+P RP G
Sbjct: 338 PPRQKRQAPERSPPTGSPPTGSPPTGRPPRG 368
>Z81520-4|CAE17808.1| 181|Caenorhabditis elegans Hypothetical
protein F31B9.4 protein.
Length = 181
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -3
Query: 342 LPSASTLMAQANPPRQSKKVQPTPAPRGRTSAGAPTISRPTSGITTL 202
+PS ++ P + +PAP T+ TI+ PT+ TT+
Sbjct: 12 IPSRDPVITTTIRPNSTTTTTTSPAPNITTTTTTTTIAPPTNTTTTI 58
>Z78415-9|CAI58633.1| 685|Caenorhabditis elegans Hypothetical
protein C17G1.6b protein.
Length = 685
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 342 LPSASTLMAQANPPRQSKKVQPTP 271
LP A +L++++N PR ++ P P
Sbjct: 97 LPQAESLLSESNSPRSRRQAHPDP 120
>Z78415-8|CAB01675.2| 765|Caenorhabditis elegans Hypothetical
protein C17G1.6a protein.
Length = 765
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 342 LPSASTLMAQANPPRQSKKVQPTP 271
LP A +L++++N PR ++ P P
Sbjct: 97 LPQAESLLSESNSPRSRRQAHPDP 120
>Z50874-5|CAA90764.1| 305|Caenorhabditis elegans Hypothetical
protein R10E4.3 protein.
Length = 305
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 107 LQCRILHHNQPTQRTWRSQKTPLR 36
L RI+HHNQP+++T + + +R
Sbjct: 203 LLSRIVHHNQPSRKTLKPATSTIR 226
>AY912076-1|AAX81408.1| 685|Caenorhabditis elegans extracellular
matrix metalloproteaseprotein.
Length = 685
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 342 LPSASTLMAQANPPRQSKKVQPTP 271
LP A +L++++N PR ++ P P
Sbjct: 97 LPQAESLLSESNSPRSRRQAHPDP 120
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 99 QNSAPQPTDPENMEVTENSTPAHTIPSQP 13
+NS P T+P + VT TP + + P
Sbjct: 1679 ENSPPVKTNPSTLNVTPEGTPPRPVATPP 1707
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 99 QNSAPQPTDPENMEVTENSTPAHTIPSQP 13
+NS P T+P + VT TP + + P
Sbjct: 1772 ENSPPVKTNPSTLNVTPEGTPPRPVATPP 1800
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 99 QNSAPQPTDPENMEVTENSTPAHTIPSQP 13
+NS P T+P + VT TP + + P
Sbjct: 1772 ENSPPVKTNPSTLNVTPEGTPPRPVATPP 1800
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 99 QNSAPQPTDPENMEVTENSTPAHTIPSQP 13
+NS P T+P + VT TP + + P
Sbjct: 1679 ENSPPVKTNPSTLNVTPEGTPPRPVATPP 1707
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 99 QNSAPQPTDPENMEVTENSTPAHTIPSQP 13
+NS P T+P + VT TP + + P
Sbjct: 1772 ENSPPVKTNPSTLNVTPEGTPPRPVATPP 1800
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 99 QNSAPQPTDPENMEVTENSTPAHTIPSQP 13
+NS P T+P + VT TP + + P
Sbjct: 1772 ENSPPVKTNPSTLNVTPEGTPPRPVATPP 1800
>U53335-4|AAL27231.1| 504|Caenorhabditis elegans Hypothetical
protein C55C3.3 protein.
Length = 504
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 339 PSASTLMAQANPPRQSKKVQPTPAPRGRTSAGAPTISRPTSGITT 205
P + + +A +P + P AP T A PTI PT+ I T
Sbjct: 330 PLSISRVAFGSPIAPKPRPSPLQAPLLETLATPPTIDAPTAAIET 374
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 99 QNSAPQPTDPENMEVTENSTPAHTIPSQP 13
+NS P T+P + VT TP + + P
Sbjct: 1771 ENSPPVKTNPSTLNVTPEGTPPRPVATPP 1799
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,849,582
Number of Sequences: 27780
Number of extensions: 151998
Number of successful extensions: 896
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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