Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6082
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0116 - 855122-855352,856733-857059,857095-858481,858636-85...    28   7.2  
01_06_0230 + 27718840-27720188,27720983-27721174,27721488-277215...    28   9.5  

>07_01_0116 -
           855122-855352,856733-857059,857095-858481,858636-858895
          Length = 734

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 519 FRMLVYWRYAKTEETSVISAYEIRFSLCD 605
           +R LVYWR  KT +    ++Y  R +  D
Sbjct: 128 YRYLVYWRLDKTSKIEAATSYAARVTTTD 156


>01_06_0230 +
           27718840-27720188,27720983-27721174,27721488-27721569,
           27721651-27721839,27721964-27722077,27722470-27722560,
           27722632-27722789,27723401-27723826,27724355-27724727,
           27725075-27725238
          Length = 1045

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 202 HCFLKQL-RR*YIKETFFLIDKNRNIPIKYQLSSKNNILPKL 324
           HC    L +   +KE F +ID+ R+ P K++LS   N  P+L
Sbjct: 554 HCIAVTLGQSGLVKELFDVIDRMRSPPKKFKLSPIQNWDPRL 595


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,993,497
Number of Sequences: 37544
Number of extensions: 463345
Number of successful extensions: 870
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)