Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6082
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.78 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.78 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   5.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   7.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   7.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 737 QRLPRPSNRNALL-LHGRNRQGGGTYQC 657
           ++LP    ++ LL L+G NR+  G YQC
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQC 399


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 737 QRLPRPSNRNALL-LHGRNRQGGGTYQC 657
           ++LP    ++ LL L+G NR+  G YQC
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQC 399


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 390 TNSDTPKTVKDVSSFIRLLLQ 328
           T  D  K  KD++SF+  LLQ
Sbjct: 171 TELDVSKRCKDLASFMENLLQ 191


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 633 QYVSKMIFACRKGKNVFHKLR 571
           QY+S  + +CRK   + + +R
Sbjct: 267 QYISDFVGSCRKTDQILYFIR 287


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 633 QYVSKMIFACRKGKNVFHKLR 571
           QY+S  + +CRK   + + +R
Sbjct: 305 QYISDFVGSCRKTDQILYFIR 325


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 390 TNSDTPKTVKDVSSFIRLLLQ 328
           T  D  K  KD++SF+  LLQ
Sbjct: 465 TELDVSKRCKDLASFMGNLLQ 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,304
Number of Sequences: 438
Number of extensions: 5858
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)