Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6080
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-1|AAK67218.1|  232|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z93375-2|CAB07564.2|  359|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical pr...    29   5.2  

>U10402-1|AAK67218.1|  232|Caenorhabditis elegans Hypothetical
           protein C34E10.10 protein.
          Length = 232

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 782 PYVCLILHRICVQAA*NLKLNLSKQLVSYLLENTH 678
           PY  L+    C  AA   KLNL++Q+  YL E TH
Sbjct: 25  PYRVLVDGTFC-NAALQEKLNLAEQIPKYLTEETH 58


>Z93375-2|CAB07564.2|  359|Caenorhabditis elegans Hypothetical
           protein C38C6.4 protein.
          Length = 359

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 437 FAWDLKLTLLFIVIIIRESNTHINISTCIFYMDTK 541
           F + +++ L+FIV+     N +I+I TC F  +T+
Sbjct: 35  FVFYIQIALIFIVLFYYLLNVYIDIKTCQFSTNTQ 69


>Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical
           protein T04B2.4 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = -1

Query: 222 SIGVELINCNYISLLVSENYYDKSFKHEQIWANLTT*HIFCVKWKFSIIFAPIEL 58
           ++GV ++  N +S+++    +   +K  +IW  ++  +IF +    S  F P +L
Sbjct: 128 AMGVSILAANRLSVMLFPTIFHLMWKGYRIWVAISIQYIFGLSVGISTFFNPTQL 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,021,538
Number of Sequences: 27780
Number of extensions: 337165
Number of successful extensions: 616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)