Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6080
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.27 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.63 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   4.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   5.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 325 YAVAGDVLDGVCYLFIFI*YVRYSILSVLYNTSRTRP 435
           Y  A D    VC +F+F+  + Y +++++   S T P
Sbjct: 303 YLKAVDAFMSVCTVFVFMALMEYCLVNIVLGDSDTPP 339


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 325 YAVAGDVLDGVCYLFIFI*YVRYSILSVLYNTSRTRPLR 441
           Y  A ++    C +F+F   V ++ ++ +Y   +T PL+
Sbjct: 290 YIKASEIWFLGCTIFLFAAMVEFAFVNTIYRRKKTVPLK 328


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +1

Query: 325 YAVAGDVLDGVCYLFIFI*YVRYSILSVLYNTSRTR 432
           Y  A D+   +C++F+F   + Y+ ++  Y  +R +
Sbjct: 300 YVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGARAK 335


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 498 VLDSLIIMTINNNVNFKSQAKR 433
           ++ SL   TI+NN N+K+  K+
Sbjct: 314 IISSLSNKTIHNNNNYKNYNKK 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,663
Number of Sequences: 438
Number of extensions: 4488
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)