Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6079
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   5.0  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    26   5.0  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   5.0  
SPAC4G8.02c |sss1||translocon gamma subunit Sss1|Schizosaccharom...    25   8.8  

>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 213 LCVICKYFIYLFIYI---YACNTFDRS*FLSFIRFLTLSRAFVATILNLTADIIYL 371
           LC + KY IYLF+ I   Y   +F  + F   +    +S  +V  +  +  ++ +L
Sbjct: 163 LCPLSKYLIYLFLSIHLFYVFQSFPWTYFCLAVSGTCISELYVLFVHPVVQELFHL 218


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 201 LMILPQVPLRKPCYDFYFL*MIKFGQLP 118
           L++  ++ L K  + +YF   +KFGQLP
Sbjct: 337 LVLAGELELAKKMHLYYFSIYLKFGQLP 364


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 586 PPSSALVSRRQSNRHD 539
           PPSS L S+R   RHD
Sbjct: 147 PPSSVLASQRHHRRHD 162


>SPAC4G8.02c |sss1||translocon gamma subunit
           Sss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 70

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 49  PGLQEFGTRLRPTRGGFTAVGVVGKLTKLDHLEEVKVV 162
           P  +EF +  +    GF  +G++G + KL H+   KV+
Sbjct: 29  PDRKEFLSISKAVATGFVLMGLIGYIIKLIHIPINKVL 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,419
Number of Sequences: 5004
Number of extensions: 38116
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)