Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6079
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    29   3.0  
09_04_0419 + 17411172-17411282,17412634-17413788                       29   3.9  
01_01_0120 + 1119319-1119447,1120565-1120632,1121682-1121928,112...    29   3.9  
10_06_0054 - 10122703-10122983,10123549-10125376                       28   5.2  
07_03_0553 - 19390886-19391452,19391596-19391709,19391827-19391883     28   5.2  
02_05_1039 + 33707196-33708815                                         28   5.2  
09_02_0346 + 7601072-7601146,7601364-7601423                           28   6.8  
05_03_0149 - 8935172-8935254,8935792-8937319                           27   9.0  

>10_07_0176 - 13826764-13827064,13827271-13827377,13827474-13827836,
            13827912-13828079,13828153-13828374,13828784-13829023,
            13829640-13829719,13829853-13830018,13830720-13830783,
            13830861-13830962,13831085-13831227,13831370-13831474,
            13831551-13831706,13832125-13832241,13832315-13832392,
            13832466-13832550,13833334-13833455,13833546-13833611,
            13835190-13835284,13835427-13835523,13835873-13835983,
            13836083-13836164,13836292-13836353,13836620-13836685,
            13838002-13838232
          Length = 1142

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
 Frame = +3

Query: 222  ICKYFIYLFIYIYACNTFDRS*FLSFIRFLTLSRAF------VATILNLTADIIYLILLR 383
            I  +F+++FIY     +FDR   + F+ ++ +S  F      +  I+ L  D +YL + R
Sbjct: 987  ITAWFMFIFIYSAIMTSFDRQENVYFVIYVLMSTFFFYLTLLLVPIIALFGDFLYLSIQR 1046


>09_04_0419 + 17411172-17411282,17412634-17413788
          Length = 421

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 6   LETPRGGGRSTLVVPRAAGIRHEASADTRWLHGRRR 113
           + T  GG     V+  AAG R      TRW  GRRR
Sbjct: 1   MATASGGVTQASVMAEAAGWRVVDGDSTRWRRGRRR 36


>01_01_0120 +
           1119319-1119447,1120565-1120632,1121682-1121928,
           1122430-1122498,1122782-1122907,1123326-1123406,
           1123484-1123561,1124084-1124319,1124399-1124545,
           1124864-1125152,1125231-1125352,1125713-1125749
          Length = 542

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 20  WWRPLYTSGPPGCRNSARGFGRHA 91
           W  PLYT    GC + A  F +HA
Sbjct: 464 WKNPLYTDNAKGCLHFANNFLKHA 487


>10_06_0054 - 10122703-10122983,10123549-10125376
          Length = 702

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 57  AGIRHEASADTRWLHGRRRCWEVDQT*SFRGSKSRNKVSVG 179
           AG+R   SAD+ WL    + W++ +  SF  S+ R K+  G
Sbjct: 201 AGVRKLPSADSEWL--LDKAWDILKNSSFLCSRDRVKIISG 239


>07_03_0553 - 19390886-19391452,19391596-19391709,19391827-19391883
          Length = 245

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 38  TSGPPGCRNSARGFGRHAVASRPSALLGS*PNLII 142
           +SGPP  +   R   R+A A    A LGS  N+++
Sbjct: 105 SSGPPAAQPQTRSLERYAQAEHAVAALGSARNVVL 139


>02_05_1039 + 33707196-33708815
          Length = 539

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 158 TFTSSK*SSLVNFPTTPTAVKPPRVGRSLVP 66
           T T+S  SSL+  P +P+A  PPR  R+  P
Sbjct: 7   TTTTSPFSSLLLLPISPSAATPPRRARTPPP 37


>09_02_0346 + 7601072-7601146,7601364-7601423
          Length = 44

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 8  GDSPWWRPLYTSGPPGCRNSARGFGR 85
          G S    PL T+GPP CRN +  FG+
Sbjct: 17 GTSTMVDPL-TAGPPSCRNGSGPFGK 41


>05_03_0149 - 8935172-8935254,8935792-8937319
          Length = 536

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 127 STSQQRRRP*SHRVSAEASCRIPAARGTTSVERPPP 20
           S +   R P +H  S+ +  R+ A+   +S+ RPPP
Sbjct: 59  SVNLAHREPATHTTSSASPLRLLASLSHSSLRRPPP 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,589,054
Number of Sequences: 37544
Number of extensions: 275132
Number of successful extensions: 845
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)