Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6079
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z78537-1|CAB01719.1|  182|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    28   6.1  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    28   6.1  
U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 219 VICKYFIYLFI-YIYACNTFDRS*FLSFIRFLTLSRAFVATILNLTADIIYLILLRTARA 395
           +I K F+ LF+ Y+ +   F  +   S + +  +   F+  +L L   +IY+ ++   R 
Sbjct: 151 LISKDFLLLFLCYLNSIQYFSENNLQSLLSYYMILLLFLNIVLPLLTPLIYIPVMIVTRK 210

Query: 396 RQHTH 410
             H H
Sbjct: 211 NSHQH 215


>Z78537-1|CAB01719.1|  182|Caenorhabditis elegans Hypothetical
           protein C09F12.1 protein.
          Length = 182

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 192 GSLTCVVLCVICKYFIYLFIYIYACNTFDRS*FLSFIRFLTLSRAFVATILNLTADIIY 368
           G + CVV+C+I    + +F  +Y   T        +I       A ++TIL L A I+Y
Sbjct: 75  GWMKCVVVCMILSLIVQIFAVVYNFLTCLACCCKKYIIHPLTLFAVISTILLLIAVIVY 133


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform a
           protein.
          Length = 1081

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 118 QQRRRP*SHRVSAEASCRIPAARGTTSVERPPP 20
           QQR +P   RV  +   ++P   G  + E PPP
Sbjct: 548 QQRSQPAPARVPPQVPSQVPVTGGVAADEPPPP 580


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform b
           protein.
          Length = 1647

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 118 QQRRRP*SHRVSAEASCRIPAARGTTSVERPPP 20
           QQR +P   RV  +   ++P   G  + E PPP
Sbjct: 548 QQRSQPAPARVPPQVPSQVPVTGGVAADEPPPP 580


>U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical
           protein F14B8.5a protein.
          Length = 537

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 458 CNFGVSNGIL*CAYSFMRVLPCACSTQQY 372
           CNF  SN    C +SF+ V+ CA  + QY
Sbjct: 173 CNFVPSNHQNQCQFSFVLVISCADQSIQY 201


>U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical
           protein F14B8.5b protein.
          Length = 501

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 458 CNFGVSNGIL*CAYSFMRVLPCACSTQQY 372
           CNF  SN    C +SF+ V+ CA  + QY
Sbjct: 137 CNFVPSNHQNQCQFSFVLVISCADQSIQY 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,682,855
Number of Sequences: 27780
Number of extensions: 226925
Number of successful extensions: 693
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)