Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6077
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 33 0.36
02_02_0315 + 8872199-8872815,8873141-8873243,8873346-8873405,887... 31 0.82
05_03_0040 - 7646525-7647775 31 1.4
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 30 1.9
05_03_0039 - 7621613-7622695 30 1.9
05_03_0035 - 7592177-7592938 30 1.9
12_01_0827 - 7662180-7662192,7662451-7662764 30 2.5
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 29 3.3
11_06_0610 - 25449085-25453284 29 4.4
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 29 4.4
05_05_0192 - 23128460-23128502,23129130-23129216,23129299-231294... 29 5.8
03_05_0861 - 28348669-28348711,28349471-28349557,28349640-283497... 29 5.8
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187... 29 5.8
05_03_0033 - 7585267-7586028 28 7.7
03_05_1079 + 30222017-30222903,30222992-30223117,30223752-302238... 28 7.7
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 32.7 bits (71), Expect = 0.36
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 429 PSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEP 548
P +PK P+ G K + + P+PK GP P+P W P
Sbjct: 194 PKPKPKPPKPGPKPKPKPPKPGPKPKPGP---PQPWWPIP 230
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = +3
Query: 384 PRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPE---PKSGPVARPEPVWSEPT* 554
P K +P+ + P +PK P+ G K P+ PK GP +P+P P
Sbjct: 159 PGPKPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGPK- 217
Query: 555 LCPRAGPISESSPI 596
P+ GP PI
Sbjct: 218 --PKPGPPQPWWPI 229
>02_02_0315 +
8872199-8872815,8873141-8873243,8873346-8873405,
8873558-8873632,8873718-8873792,8873876-8873956,
8874466-8874657,8874762-8874947,8875047-8875094
Length = 478
Score = 31.5 bits (68), Expect = 0.82
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Frame = +3
Query: 195 GKSAVHSMGSTRQPSLPESV-AIAVPRPKSV*QLC*LSCCAHWNVPSYS*SNNSKPGQLW 371
G++ + S G+ QP++ E+ A A P + + A P S + P +
Sbjct: 340 GQALLPSTGTKSQPAITEAAPATAEAAPAAA-----TATAAPPAAPVEETSTEAAPAEPT 394
Query: 372 WVSNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEP 548
+S L+P S P A + ++ S+S S ATE P S PVA P + P
Sbjct: 395 PLSPYTNYPDLKPPSSPS-PLAPAEATKNESESESAATESAPAVNSAPVAEAAPEAAPP 452
>05_03_0040 - 7646525-7647775
Length = 416
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +3
Query: 387 RTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEP 533
R +SK E +P EPK + E PEP+ PV PEP
Sbjct: 40 RFMSKQGRVTYEKLPEPEPKPKPKPHPKPTPKPEPKPEPEPKPVPEPEP 88
>12_02_0370 +
18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 378 SNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARP 527
S P T S+ P + S PS++P P + V + P P+ P +P
Sbjct: 32 SQPTTTSRSIPVVLPSAPSSKPPPPTQTAPPVPVVISEPPPPQPQPEPQP 81
>05_03_0039 - 7621613-7622695
Length = 360
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 384 PRTVSKLRPTIR-ESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LC 560
P+ KL P + P EPKL E PEPK P P+P + +P
Sbjct: 212 PKPEPKLHPKPEPKPHPEPEPKLKPEPKPEPKPEPEPKPEPKPEPKPEPKP-YPKPK--- 267
Query: 561 PRAGPISESSPI 596
P P+ + PI
Sbjct: 268 PEPKPVPKPKPI 279
Score = 29.9 bits (64), Expect = 2.5
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Frame = +3
Query: 387 RTVSKLRPTIRESIPSAEPK---LPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*L 557
R +SK + E P EPK P+ K S+ E PEPK P PEP L
Sbjct: 40 RFMSKQGRAMYEKPPELEPKPKPKPKPHPKHESKP-EPKPEPKPEPKPYPEPKPETKPEL 98
Query: 558 CPRAGPISESSP 593
P P E P
Sbjct: 99 KPEPKPNPEPKP 110
>05_03_0035 - 7592177-7592938
Length = 253
Score = 30.3 bits (65), Expect = 1.9
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +3
Query: 378 SNPRTVSKLRPTIR---ESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEP 548
S P+ +K P +S P AEPK E EPKS P P+ SEP
Sbjct: 123 STPQPEAKSEPKSEPKPKSEPYAEPKSEPKSEPQSEPNPETKAEPKSEPKYEPK---SEP 179
Query: 549 T*LCPRAGPISESSP 593
T P+ P +ES P
Sbjct: 180 T---PQTEPRAESQP 191
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 378 SNPRTVSKLRPTIR-ESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT* 554
S P T S+ +P + E EPK + + P+PKS P A P+ SE
Sbjct: 97 SKPATYSESKPESKAEPESKPEPKAESTPQPEAKSEPKSEPKPKSEPYAEPK---SE--- 150
Query: 555 LCPRAGPISESSP 593
P++ P SE +P
Sbjct: 151 --PKSEPQSEPNP 161
>12_01_0827 - 7662180-7662192,7662451-7662764
Length = 108
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +3
Query: 363 QLWWVSNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEP 533
Q WW+ P+T + P+ R + + LPR S P PK+G A P P
Sbjct: 18 QKWWICTPKTQQTVVPSAR-GPTATDQVLPRQRSD-----RSACPRPKNGGSACPRP 68
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +3
Query: 378 SNPRTVSKLRP--TIRESIPSAEPKLPRSGSKSVSRATEQFPEP--KSGPVARPEPVWSE 545
+N V+ + P ++ ES P P +P K +S Q P P K+ PV PEP S
Sbjct: 534 ANNVNVNMVHPVGSLSESTPMQPPVMPPPIPKLLSPPAPQAPMPPLKASPVPPPEP--SP 591
Query: 546 PT*LCPRAGP 575
P P+A P
Sbjct: 592 PP--APKAAP 599
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Frame = +3
Query: 375 VSNPRTVSKLRP--TIRESIPSAEPKL--PRSGSKSVSRATEQFPEPKSGPVARPEPVWS 542
+S P T K P T ES P + PK P + AT P P P+ P PV S
Sbjct: 1085 ISPPETPEKSYPPSTPEESSPPSVPKASSPPTEKSLPPPATVSLPPPTVKPLPPPVPVSS 1144
Query: 543 EP 548
P
Sbjct: 1145 PP 1146
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 378 SNPRTVSKLRPTIRESIPSAEPKLP-RSGSKSVSRATEQFPEPKSGPVARPEPVWSEP 548
S+PRTV + + R S P PK P + S++ S +P G R V P
Sbjct: 558 SSPRTVQRKAESERRSRPPVSPKSPSKKSSEAASPGGRTRTKPSQGKNHRDNEVSKSP 615
>05_05_0192 -
23128460-23128502,23129130-23129216,23129299-23129443,
23130812-23130872,23131046-23131164,23131320-23131374
Length = 169
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 149 VFVALDHVNDPTDYFFRNVENLSWF 75
VF DH D+FF++ EN+S+F
Sbjct: 52 VFSTKDHRQVKNDFFFKSAENISFF 76
>03_05_0861 -
28348669-28348711,28349471-28349557,28349640-28349784,
28350832-28350900,28351147-28351207,28351375-28351493,
28351659-28351713
Length = 192
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 149 VFVALDHVNDPTDYFFRNVENLSWF 75
VF DH D+FF++ EN+S+F
Sbjct: 52 VFSTKDHRQVKNDFFFKSAENISFF 76
>03_02_0981 +
12917195-12917572,12917661-12917818,12918732-12918765,
12918942-12919074,12919167-12919221,12919281-12920064,
12920440-12920769,12920788-12920895,12921259-12921678,
12921775-12921847,12922291-12922376,12922873-12922992,
12923086-12923156,12923350-12923449
Length = 949
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 300 LSCCAHWNVPSYS*SNNSKPGQLWWVSNPRTVSKL 404
LSC +H P + S S+ G +W V + +SKL
Sbjct: 750 LSCSSHSEEPKVNGSERSQAGSVWDVFRRQDISKL 784
>05_03_0033 - 7585267-7586028
Length = 253
Score = 28.3 bits (60), Expect = 7.7
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 378 SNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEP-VWSEPT* 554
S P+ S+L + S P +EP+ + +E EPKS P + EP S+P
Sbjct: 135 SEPKPKSELYAEPK-SEPKSEPQSEPNPETKAEPKSEPKSEPKSEPTPQTEPKAESQPE- 192
Query: 555 LCPRAGPISES 587
P+ P SES
Sbjct: 193 --PKTEPKSES 201
>03_05_1079 +
30222017-30222903,30222992-30223117,30223752-30223808,
30224883-30224913,30225159-30225236,30225297-30225383
Length = 421
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/80 (26%), Positives = 30/80 (37%)
Frame = -1
Query: 613 FDYYQHIGLDSEIGPALGHS*VGSLHTGSGLATGPDFGSGNCSVALETDFEPDRGNFGSA 434
F Q + + SE+ G G + G G F S NC+ + F GS
Sbjct: 182 FQLMQQMKMQSEMIKRSGLGEQGGSN-GGGKGVNLKFDSSNCTASSSRSFLSSLSMEGSI 240
Query: 433 LGIDSLIVGRSFETVLGFET 374
+D R F+ V G +T
Sbjct: 241 ASLDGSRSSRPFQLVSGSQT 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,486,311
Number of Sequences: 37544
Number of extensions: 473676
Number of successful extensions: 1849
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1742
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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