Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6076
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.28 
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   3.4  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   7.9  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   7.9  
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb...    25   7.9  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   7.9  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   7.9  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   7.9  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = +3

Query: 141 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 293
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 186 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 293
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 329 VLTVNMSSSDPPTLLQWLGGQLPGNQRF 412
           V+++  ++   P +LQW GG+  G+  F
Sbjct: 706 VISIAKANPTFPIVLQWTGGRAGGHHSF 733


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 149 NKIEPRSYSIIPCTKYSSSIFSP 81
           N ++P+S +++P T +  SI SP
Sbjct: 29  NPVKPQSSNVVPGTSHIGSIKSP 51


>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 365 TLLQWLGGQLPGNQRFWTPGGVWLQS*NL 451
           TLLQ LG  +P        G VW+ S NL
Sbjct: 180 TLLQTLGSYIPFEIAVGMNGRVWVNSENL 208


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 125 NMISVLFCWFSELRGND 175
           N +S+L C FS L GND
Sbjct: 476 NQLSLLKCTFSNLDGND 492


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 325 PSSNRKYVI*RSADVTTMARRAASGKPKILDSGGSMVAKLKLKGIDGRA 471
           P++NR   +  S +VT  +++     PKIL    + + + K K I G A
Sbjct: 749 PTANRIACLTESGEVTVYSKKGPVWSPKILSQNKNYLTETK-KDIYGIA 796


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 470 ALPSIPLSFSFATILPPESKIFGFPEAA 387
           ALP  PLSFS     P ++     PE+A
Sbjct: 425 ALPREPLSFSLPEKAPEKATNISIPESA 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,499
Number of Sequences: 5004
Number of extensions: 37840
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)