Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6074
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97403-6|AAB52471.2|  583|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z69662-6|CAA93501.1|  283|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U58756-4|AAC48082.1|  291|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U41263-11|AAO38595.1|  516|Caenorhabditis elegans Hypothetical p...    27   8.6  

>U97403-6|AAB52471.2|  583|Caenorhabditis elegans Hypothetical
           protein T10E9.3 protein.
          Length = 583

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 266 NLTLTEKIYGTCCIVASVENDNTRCC 189
           N+T+T  ++  C +++ V++  T CC
Sbjct: 545 NMTVTSHMWKACTLLSQVQHVTTMCC 570


>Z69662-6|CAA93501.1|  283|Caenorhabditis elegans Hypothetical
           protein F56D5.10 protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/31 (35%), Positives = 24/31 (77%)
 Frame = -3

Query: 455 SYNSQIVNPINLNFFVFF*VTRASLQI*IKT 363
           SY+ +++   +LNFFV+F +T+++ +I +K+
Sbjct: 231 SYDLRLLAISSLNFFVYFVLTKSTRKIVLKS 261


>U58756-4|AAC48082.1|  291|Caenorhabditis elegans Hypothetical
           protein F58F9.6 protein.
          Length = 291

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 1   GIVVPWTKTSFCASKAQSCDWLLFFFKC 84
           G+   WT T  C ++  SC  +L+  KC
Sbjct: 30  GLWSEWTTTEACPTECGSCSKILYTRKC 57


>U41263-11|AAO38595.1|  516|Caenorhabditis elegans Hypothetical
           protein T19D12.2c protein.
          Length = 516

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 114 HLKYLQIDSHNSNILSVGFAVKQKMAATSVVVLD 215
           ++ Y   D++NSNIL  G A ++  A +   +LD
Sbjct: 472 NIPYAFTDNYNSNILQYGIAKQEVQAISQNYLLD 505


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,951,563
Number of Sequences: 27780
Number of extensions: 156664
Number of successful extensions: 362
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)