Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6073
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0294 + 22089915-22091333                                         27   4.5  
06_01_0140 + 1065406-1065466,1066570-1067156                           27   5.9  
08_02_1461 - 27299891-27301870                                         27   7.8  
05_06_0018 + 24966721-24968856                                         27   7.8  

>09_06_0294 + 22089915-22091333
          Length = 472

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 313 RAHGALTWDVTNTSPSPHW 257
           R +G  TW   ++SPSP W
Sbjct: 327 RVYGLFTWSGRSSSPSPSW 345


>06_01_0140 + 1065406-1065466,1066570-1067156
          Length = 215

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
 Frame = -2

Query: 376 PRGVMIDLLMIIYSIAMITNRRAHG---ALTWDVTNTS--------PSPHWW 254
           PRGVM  +      +++I NRR+ G   +L + V+ +S         +PHWW
Sbjct: 13  PRGVMAIIFQSGGKLSLIENRRSAGGDSSLPFSVSTSSHTFLFSVAATPHWW 64


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 190 LLHGRNRQGGGTYSRGLTRGPTTS 261
           LL GR R GGG + RGL   P  S
Sbjct: 290 LLRGRRRGGGGGHRRGLFVFPLVS 313


>05_06_0018 + 24966721-24968856
          Length = 711

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 322 TNRRAHGALTWDVTNTSPSPHWW*D 248
           TNRR HG L W  + T P+  +W D
Sbjct: 407 TNRR-HGHLWWKESITPPATRYWDD 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,317,626
Number of Sequences: 37544
Number of extensions: 242523
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)