Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6073
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L08403-7|AAA28019.2|  309|Caenorhabditis elegans Hypothetical pr...    29   1.0  
U13644-7|AAM48536.2|  700|Caenorhabditis elegans Hypothetical pr...    28   2.3  
U13644-6|AAB52678.1|  739|Caenorhabditis elegans Hypothetical pr...    28   2.3  
U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidas...    27   7.1  

>L08403-7|AAA28019.2|  309|Caenorhabditis elegans Hypothetical
           protein F42H10.9 protein.
          Length = 309

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 215 AVVPTRADSQEVLPPVRARASVSNVPG*RPVSSSIRYHRYAIYDH*QIYHHPSR 376
           + +P     Q+  P +R +A+ +N+     VSS +   R AIY   Q  H P+R
Sbjct: 181 SAMPPNGHQQQYQPQLRRKANTTNIVD---VSSQVPSARNAIYGSWQDRHRPTR 231


>U13644-7|AAM48536.2|  700|Caenorhabditis elegans Hypothetical
           protein F56D2.6b protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +2

Query: 86  IYNVNAPPPTLRYKF*DLSILSYNGCLTLQTQTHYCFTAEIGRAVVPTRADSQEVLPPVR 265
           I+   +  P   YK   + +L  N C+TL  +T    T +I +  V      Q+  PP +
Sbjct: 69  IWEKRSQLPVWEYKEKFMELLRNNQCITLVGETGSGKTTQIPQWAVEFMKQQQQGQPPGQ 128

Query: 266 ARASVSNVP 292
           AR      P
Sbjct: 129 ARLVACTQP 137


>U13644-6|AAB52678.1|  739|Caenorhabditis elegans Hypothetical
           protein F56D2.6a protein.
          Length = 739

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +2

Query: 86  IYNVNAPPPTLRYKF*DLSILSYNGCLTLQTQTHYCFTAEIGRAVVPTRADSQEVLPPVR 265
           I+   +  P   YK   + +L  N C+TL  +T    T +I +  V      Q+  PP +
Sbjct: 69  IWEKRSQLPVWEYKEKFMELLRNNQCITLVGETGSGKTTQIPQWAVEFMKQQQQGQPPGQ 128

Query: 266 ARASVSNVP 292
           AR      P
Sbjct: 129 ARLVACTQP 137


>U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical
           protein C14C11.3 protein.
          Length = 596

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 238 VRASRYHRPAYFCREAVMRLGLKGKAAVVTKYTKILELISQGG 110
           V+  R  R   F +  V+   LKG    V  +  +L LI++GG
Sbjct: 99  VKIERPSRDNEFYKNVVIHFDLKGAPPKVDYFLDLLRLIAKGG 141


>AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 596

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 238 VRASRYHRPAYFCREAVMRLGLKGKAAVVTKYTKILELISQGG 110
           V+  R  R   F +  V+   LKG    V  +  +L LI++GG
Sbjct: 99  VKIERPSRDNEFYKNVVIHFDLKGAPPKVDYFLDLLRLIAKGG 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,480,155
Number of Sequences: 27780
Number of extensions: 176915
Number of successful extensions: 321
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)