Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6073
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   5.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   9.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   9.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 172  SNPNALLLHGRNRQGGGTYSRGLTRGPTTSEG 267
            S  +++LLH ++   GG    G T    T+ G
Sbjct: 1415 STSSSILLHWKSGHNGGASLTGYTLHYRTAHG 1446


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 172  SNPNALLLHGRNRQGGGTYSRGLTRGPTTSEG 267
            S  +++LLH ++   GG    G T    T+ G
Sbjct: 1411 STSSSILLHWKSGHNGGASLTGYTLHYRTAHG 1442


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 198 RQK*AGRWYLLARTHKRSYHQ*GLGLVLVTSQVSAP*ARLF 320
           RQK AG W +   +  R Y    + L+LV + +  P A  F
Sbjct: 72  RQKAAGHWVIHPCSSFRFYWDLCMLLLLVANLIILPVAISF 112


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 198 RQK*AGRWYLLARTHKRSYHQ*GLGLVLVTSQVSAP*ARLF 320
           RQK AG W +   +  R Y    + L+LV + +  P A  F
Sbjct: 72  RQKAAGHWVIHPCSSFRFYWDLCMLLLLVANLIILPVAISF 112


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 198 RQK*AGRWYLLARTHKRSYHQ*GLGLVLVTSQVSAP*ARLF 320
           RQK AG W +   +  R Y    + L+LV + +  P A  F
Sbjct: 72  RQKAAGHWVIHPCSSFRFYWDLCMLLLLVANLIILPVAISF 112


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 400 GRIGYRAPPRGVMIDLLMIIYSIAMI 323
           GR+GYRA     +  +L  I  I M+
Sbjct: 132 GRMGYRALLYYTVTTILAAIVGIVMV 157


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 370 GVMIDLLMIIYSIA 329
           GV+ + L IIYS+A
Sbjct: 10  GVLFNTLHIIYSVA 23


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 222  YLLARTHKRSYHQ*GLGLVLVTSQV 296
            Y+L+   +  YH+   G+ L T++V
Sbjct: 1103 YMLSLRDENRYHEDIFGITLRTAEV 1127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,632
Number of Sequences: 438
Number of extensions: 2430
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)