Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6072
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    25   4.9  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    25   6.5  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   8.5  

>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 7/19 (36%), Positives = 16/19 (84%)
 Frame = -3

Query: 174 IKKSYYSQFSLLYDQPLFF 118
           I++ YY++F+++YD+  +F
Sbjct: 247 IRRGYYAEFNVMYDRGTWF 265


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 145 TLIRSTPIFPSRLVFFLFYAQIRNK 71
           +++++TP+ PSR +F     + RNK
Sbjct: 169 SILQNTPVTPSRKIFHYLSPRDRNK 193


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 282 LLSNFHPSMINPYFLFVNYKL*FFW 208
           ++ +F PS+    F+F N++  F+W
Sbjct: 148 IVRSFQPSIHGKTFVFANHEKSFYW 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,156
Number of Sequences: 5004
Number of extensions: 31228
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)