Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6071
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850...    28   6.4  
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531...    28   6.4  
10_07_0014 + 11800251-11800643,11800721-11801288,11801694-118017...    28   8.4  
07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125     28   8.4  

>08_01_0871 +
           8502396-8502417,8503606-8503732,8503891-8503990,
           8504725-8504793,8504870-8505043,8505196-8505373,
           8505462-8505594,8505702-8505864,8507031-8507181,
           8507266-8507366,8507633-8507788,8508105-8508173,
           8508256-8508324,8508403-8508540,8508639-8508767,
           8509013-8509053,8510019-8510106,8510199-8510339,
           8510428-8510553,8510671-8510736,8510994-8511291,
           8511387-8511595,8511689-8511802
          Length = 953

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 394 GGIRIWRVNGRDKFFLVLLN-SKFIVKFTIFFRYKVYNG 507
           G +++WR+N +DK  L   + SKF       F+Y +Y G
Sbjct: 403 GSLQVWRINDKDKILLPSADQSKFYTGDCYIFQY-MYPG 440


>06_03_0999 -
           26752410-26752523,26752601-26752830,26752914-26753169,
           26753763-26753828,26753921-26754046,26754148-26754288,
           26754377-26754387,26754523-26754670,26755326-26755454,
           26755573-26755710,26755808-26755876,26755955-26756023,
           26756565-26756720,26756885-26756985,26757068-26757215,
           26757540-26757702,26757833-26757965,26758049-26758226,
           26758330-26758572,26758664-26758732,26759063-26759187,
           26759727-26759766,26760756-26760812,26762831-26762935
          Length = 1004

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 394 GGIRIWRVNGRDKFFLVLLNS-KFIVKFTIFFRYKVYNGSQ 513
           G +++WRVNG +K FL      KF       F+Y  Y G +
Sbjct: 451 GNLQVWRVNGTEKTFLSFSEQCKFYSGDCYIFQYS-YPGEE 490


>10_07_0014 +
           11800251-11800643,11800721-11801288,11801694-11801729,
           11802908-11802911,11804142-11805108
          Length = 655

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 263 PRKTFIINDNLLVPQQKSPTIFTALPLQHIPVELKIKK 150
           PRKT   N  +L P++K    FTA P + + + L  +K
Sbjct: 438 PRKTVHGNHPVLAPKRKGQDTFTAPPRKWLKMHLVCRK 475


>07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125
          Length = 790

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 311 TSSKLYTIRRIM*LKNVFTEKKKQFYKMAASGYGA*TDVINFF 439
           T+S    + R++  K  FTE ++ F KM      A  DV NF+
Sbjct: 669 TASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFY 711


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,924,196
Number of Sequences: 37544
Number of extensions: 262196
Number of successful extensions: 395
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)