Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6071
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U00040-3|AAM22033.1|  638|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z36753-5|CAA85334.1|  173|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical
           protein C08B6.2 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 381 CFFFSVNTFFNYIIRLIVYNFEL 313
           CF+ ++  FF YII +++++F L
Sbjct: 394 CFYHNIKYFFYYIIFMLLFSFNL 416


>U00040-3|AAM22033.1|  638|Caenorhabditis elegans Hypothetical
           protein C18H2.3 protein.
          Length = 638

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 528 LRTTPCSKEQDTSLSKQHPS*EFSKFKTVSVTCYLSKML 644
           L++T  SKE D  +SK +PS E  +F +      + KM+
Sbjct: 75  LKSTNYSKEVDDEISKHNPSNEVRQFWSTEYKTTIRKMI 113


>Z36753-5|CAA85334.1|  173|Caenorhabditis elegans Hypothetical
           protein T09A5.6 protein.
          Length = 173

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 251 KSFSDEMPKVIMRYRLIR 304
           K FS+EMP ++M YR IR
Sbjct: 150 KEFSEEMPDLVMYYRSIR 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,039,484
Number of Sequences: 27780
Number of extensions: 275771
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)