Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6070
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    28   1.0  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    27   1.8  
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    27   2.3  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   2.3  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    25   7.1  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   7.1  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   7.1  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    25   9.3  

>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 317 MLLVQLASPQPKPERPHRRSET*DLVSFIGSGFIGSDLFQIFFFCKWVV 171
           M + ++  P   PE PH+R    DL  + G+G++ + L  +   CK V+
Sbjct: 298 MSIAEMVVPYGNPEHPHQRKHAFDLGEY-GAGYLTNPL-ALGCDCKGVI 344


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +1

Query: 181 LQKKKI*NRSLPINPLPIKLTRSHVSDLR 267
           L+KKK     LP NPL IKL     S LR
Sbjct: 337 LKKKKFGKHRLPNNPLEIKLGDELTSSLR 365


>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +2

Query: 326 PCPEYFTYETSPSTPDRWHGVLVLPPEMVADYMWIYIALNRKTHMFAVRLFVLQPSWLAG 505
           P   +F  + + +  +  HG L++PP++ A Y  + + L  K  + A R  V   SWL  
Sbjct: 27  PTKPFFFLKPTSAIVEPGHGNLIIPPDVSAHYE-VELGLIMKDRLPA-RRPVSSNSWLDS 84

Query: 506 *SVFF 520
              +F
Sbjct: 85  IGAYF 89


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 383 GVLVLPPEMVADYMWIYIALNRKTHMFAVRLFVLQPSWLAG*SVFFFFIIERLLV 547
           G++ L   ++   +W+  A N +  M    +F+  P WL+G   FFF + E  ++
Sbjct: 761 GLICLSLWIIGQLLWLISAYNLE--MLGKSVFI--PLWLSGLLFFFFNVYELKII 811


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 536 SQL*KKKIRFIRQATTAVVQKVLRQTYEFCDSMQ 435
           SQ+   KIRFI   + ++    L Q ++ CDSM+
Sbjct: 164 SQIRVWKIRFIISISFSLAVMFLPQIFDSCDSMR 197


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 406 NGCRLHVDLHCIESQNSYVCRKTFCTTA 489
           NGC+LH  +  I+S++   C  ++   A
Sbjct: 11  NGCKLHKSVEFIQSRDDNACFGSYIAVA 38


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 130 KFTKSLLFW--KAKLKTTHLQKKKI*NRSLPINPLPIKLTRSHVS 258
           K  KS+  W    KL+     KK+I  ++L  NP  + L +  V+
Sbjct: 337 KLPKSVTLWLEAEKLENQAQHKKRIIKKALEFNPTSVSLWKEAVN 381


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 508 SSGKPRRL*YKKSYGKHMSFAIQCNVN---PHVVCNH 407
           S+ +P+    KKS   ++S  IQ N N   PHV C +
Sbjct: 66  SNFRPKTHKKKKSVSSYLSSTIQKNANENIPHVQCRN 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,921
Number of Sequences: 5004
Number of extensions: 54442
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)