Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6070
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200...    28   5.5  
05_01_0272 + 2111918-2112175,2112666-2113637                           28   7.3  
02_04_0236 - 21170753-21170794,21171089-21172220,21172332-211726...    28   7.3  

>03_05_0899 -
           28619081-28619208,28619309-28619369,28619936-28620095,
           28620200-28620237,28620341-28620394,28620562-28620636,
           28620744-28620872,28621172-28621259,28621340-28621446,
           28621547-28621595,28621683-28621786,28622019-28622133,
           28622517-28622596
          Length = 395

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 404 EMVADYMWIYIALNRKTHMFAVRLFV 481
           +++A+Y+WI++ LN    +F V L V
Sbjct: 20  KVIAEYIWIHLILNHHQFLFMVVLLV 45


>05_01_0272 + 2111918-2112175,2112666-2113637
          Length = 409

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 497 ATTAVVQKVLRQTYEFCDSMQCKSTCSLQPFQE 399
           AT AVV+K +    E C   +CK + SL   QE
Sbjct: 309 ATIAVVEKPMTNRIEVCMGGKCKKSGSLAVLQE 341


>02_04_0236 -
           21170753-21170794,21171089-21172220,21172332-21172601,
           21173043-21173305,21173406-21173492,21174149-21174326,
           21174784-21174984,21175769-21176025
          Length = 809

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 494 TTAVVQKVLRQTYEFCDSMQC 432
           TTAVV  VLR   EFC S +C
Sbjct: 341 TTAVVAVVLRSLIEFCRSGKC 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,903,158
Number of Sequences: 37544
Number of extensions: 371358
Number of successful extensions: 871
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)