Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6070
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical...    33   0.23 
Z93393-11|CAB07698.2|  536|Caenorhabditis elegans Hypothetical p...    29   2.8  
AF088285-1|AAC98292.1|  536|Caenorhabditis elegans caspase-relat...    29   2.8  
AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical ...    29   3.7  

>AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical
           protein Y50D7A.10 protein.
          Length = 138

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -1

Query: 521 KKIRFIRQAT-TAVVQKVLRQTYEFCDSMQCKSTCSLQPFQEAALIRHATDLVLMGMSRK 345
           KK RF +  T  A++ K+ R+++E   S Q  + CS++ F+E  L       +L+   +K
Sbjct: 19  KKFRFSKSTTMNALILKIDRESHEL-QSEQLLNDCSIEEFKE-ELPSQQPRFILLSWCKK 76

Query: 344 *NTQDTETSMLLVQLASPQPKPE 276
            + +     MLL+        PE
Sbjct: 77  HSDERISYPMLLIYYCPNGSSPE 99


>Z93393-11|CAB07698.2|  536|Caenorhabditis elegans Hypothetical
           protein Y48E1B.13a protein.
          Length = 536

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -2

Query: 586 RPPVL---VKLERPSGHQ*SLNYKKKKYASSGKPRRL*YKKSYGKHMSFAIQCNVNP 425
           +PP+L    KL+ P+  +   +Y  ++Y S  +  R   KKS  KH  +  + N NP
Sbjct: 236 KPPILDKPTKLDDPAETRHDCSYSLEEYDSQSRMPRTDAKKSNHKH-KYCYEMNSNP 291


>AF088285-1|AAC98292.1|  536|Caenorhabditis elegans caspase-related
           protein 1A protein.
          Length = 536

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -2

Query: 586 RPPVL---VKLERPSGHQ*SLNYKKKKYASSGKPRRL*YKKSYGKHMSFAIQCNVNP 425
           +PP+L    KL+ P+  +   +Y  ++Y S  +  R   KKS  KH  +  + N NP
Sbjct: 236 KPPILDKPTKLDDPAETRHDCSYSLEEYDSQSRMPRTDAKKSNHKH-KYCYEMNSNP 291


>AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical
           protein C18G1.8 protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = -2

Query: 583 PPVLVKLERPSGHQ*SLNYKKKKYASSGKPRRL*YKKSYGKHMSFAIQCNVNPHVVCNHF 404
           P VL  ++    H   +  +  KY S+ K     Y K  G    F  + + N HV C H 
Sbjct: 159 PRVLANIDDQYLHITGIFLQSWKYFSNMKDELTGYLKKSGAKFGFLPKSDKNTHVNCVHV 218

Query: 403 RR 398
           R+
Sbjct: 219 RK 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,122,323
Number of Sequences: 27780
Number of extensions: 316795
Number of successful extensions: 765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)