Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6070
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    27   0.16 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.83 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.83 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       24   1.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.7  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 328 RRRQCCLYSLRRHSQNQRDHTEDL 257
           RR   C YSL+RH Q++ + ++ L
Sbjct: 12  RRNFSCYYSLKRHFQDKHEQSDTL 35


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 518 FFFIIERLLVARRP-FQFH*DRWAS 589
           F  I+ RLLV RRP ++F  +R++S
Sbjct: 349 FIHILPRLLVMRRPQYKFETNRYSS 373


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 518 FFFIIERLLVARRP-FQFH*DRWAS 589
           F  I+ RLLV RRP ++F  +R++S
Sbjct: 349 FIHILPRLLVMRRPQYKFETNRYSS 373


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 267 VWSLWFWLWRRKLYK 311
           V SLW+W+ R   YK
Sbjct: 278 VMSLWYWIDRNSAYK 292


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 327 RVLSISLTRHPHQHQIG 377
           R+L   L++HP QH +G
Sbjct: 189 RLLHGILSQHPQQHGLG 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,881
Number of Sequences: 438
Number of extensions: 3841
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)