Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6067
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    31   0.16 
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    26   4.6  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   8.0  

>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +1

Query: 436 IDLKNVLVFAFLIFSMLFSRFLTLLILNKCYNDLSICILRKIYQKKICSKYTSSNTIQRS 615
           +DL   +V+ F+ F + F+  + ++ L  CY  + I   R   ++K+ + +  S  +Q  
Sbjct: 390 LDLGVAMVYFFIKFDIYFTLIVLIMTLCYCYVTVKITSWRTEARRKMVNSWRESYAVQND 449

Query: 616 IFRN 627
              N
Sbjct: 450 AIMN 453


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 167 QGNPKLGPDDR-A*CSKCKYGICKYGYGMFQGNLS 268
           QG  K  P  + A C KC +  C +    + G+LS
Sbjct: 272 QGPSKRDPGQKLAICQKCDFAFCSFCQATWHGDLS 306


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 158 PITQGNPKLGPDDRA*CSKCKYGICKYGYGMFQGNLSFIYS--YKSIKTRK 304
           PI + +PK      A C +C Y    YGY + Q   S + +  ++ +K RK
Sbjct: 686 PIEESSPKDKSKIVALCQRCGYVWRYYGYPLQQATPSDLRNCDFEPVKKRK 736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,504
Number of Sequences: 5004
Number of extensions: 60291
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)