Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6067
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0190 + 12448027-12450825                                         32   0.39 
05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877     28   6.3  
01_07_0320 + 42708082-42708324,42708359-42708409,42708987-427091...    28   8.3  

>04_03_0190 + 12448027-12450825
          Length = 932

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 476 KMRNANTNTFFRSMCSRQ*AVFVSWIPSLS*AGITILGYHKKRKFFWVQ 330
           K+ ++N ++FF S C+    +F+ W  SLS   + +L       F W+Q
Sbjct: 770 KLNDSNLHSFFNSFCNNLTCLFLGW-SSLSRDPLPLLSQMTNLAFLWLQ 817


>05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877
          Length = 446

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 227 ICKYGYGMFQGNLSFIYSYKSIKTRK*SIINDCPLAPKKIF 349
           IC++     +G L ++ ++  +     S +NDCPL+ +++F
Sbjct: 253 ICRWA---MEGKLPYVAAFTQVDKLLGSSLNDCPLSSRQLF 290


>01_07_0320 +
           42708082-42708324,42708359-42708409,42708987-42709122,
           42709226-42709275,42709978-42710066,42710398-42710434,
           42710435-42710471,42710588-42710733,42711099-42711241,
           42711735-42711768,42711962-42712064,42712236-42712381,
           42712982-42713323,42713416-42713656,42713733-42713788,
           42713852-42713920
          Length = 640

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 562 YQKKICSKYTSSNTIQRSIFRNNIKLMDVYVHSLVEC*FL 681
           Y + IC  Y + N +Q    R+ +KL    ++S +EC FL
Sbjct: 147 YVQDICPGYLAQNFVQVISRRSFVKLPYDLLYSTIECPFL 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,341,921
Number of Sequences: 37544
Number of extensions: 308599
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)