Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6067
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039040-2|AAO91670.1| 615|Caenorhabditis elegans Hypothetical ... 31 0.80
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 29 3.2
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 29 3.2
AF038606-7|AAB92021.1| 344|Caenorhabditis elegans Hypothetical ... 29 3.2
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 29 3.2
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 29 3.2
Z72518-1|CAA96699.2| 395|Caenorhabditis elegans Hypothetical pr... 28 5.7
U70855-5|AAB09160.2| 886|Caenorhabditis elegans Hypothetical pr... 28 7.5
U28971-5|AAA68379.1| 982|Caenorhabditis elegans Hypothetical pr... 27 9.9
AC006675-6|AAK84556.2| 433|Caenorhabditis elegans Nuclear hormo... 27 9.9
>AF039040-2|AAO91670.1| 615|Caenorhabditis elegans Hypothetical
protein T22B11.4b protein.
Length = 615
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 421 YCREHIDLKNVLVFAFLIFSMLFSRFLTLLILNKC--YNDLSICILRKIYQKKICSKY 588
Y +++ ++N+ + +IF++ S L + NKC + ++ + RK + KK+ Y
Sbjct: 484 YSPDYLRVRNITIATLIIFAVFCSLGLCCIYKNKCCKVSRNAVYLTRKFFGKKLAENY 541
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 246 PYPYLHIPYLHLEHHARSSGPNLGLPCVI 160
PYP +H YLH+ G NL +PC++
Sbjct: 215 PYPDVHF-YLHMRRRTLYYGFNLIMPCIL 242
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 246 PYPYLHIPYLHLEHHARSSGPNLGLPCVI 160
PYP +H YLH+ G NL +PC++
Sbjct: 215 PYPDVHF-YLHMRRRTLYYGFNLIMPCIL 242
>AF038606-7|AAB92021.1| 344|Caenorhabditis elegans Hypothetical
protein C04C3.6 protein.
Length = 344
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +1
Query: 355 LW*PNMVMPA*LNEGIHETNTAYCREHIDLKNVLVFAFLIFSMLFSRFLTLLILNKCYND 534
LW P ++ L+ G ++ YC E + + +LIF F F L+L D
Sbjct: 158 LWTPILITE--LSVGADASSGTYCAEDPRIFGEITLRYLIFFECFMTFFLPLVLT-VITD 214
Query: 535 LSICILR 555
S+ I+R
Sbjct: 215 FSVLIMR 221
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 246 PYPYLHIPYLHLEHHARSSGPNLGLPCVI 160
PYP +H YLH+ G NL +PC++
Sbjct: 215 PYPDVHF-YLHMRRRTLYYGFNLIMPCIL 242
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 246 PYPYLHIPYLHLEHHARSSGPNLGLPCVI 160
PYP +H YLH+ G NL +PC++
Sbjct: 215 PYPDVHF-YLHMRRRTLYYGFNLIMPCIL 242
>Z72518-1|CAA96699.2| 395|Caenorhabditis elegans Hypothetical
protein ZC374.1 protein.
Length = 395
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/60 (23%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 400 IHETNTAYCREHIDLKNV-LVFAFLIFSMLFSRFLTLLILNKCYNDLSICILRKIYQKKI 576
I++ + C D+ N ++ AF +F ++ S ++ LLI+ CY + + I +++ ++++
Sbjct: 163 INDEDMYQCYPRTDVFNDDVLIAFNLFHVITSFYIPLLIVIICYLAIGVSIRKQMAERRL 222
>U70855-5|AAB09160.2| 886|Caenorhabditis elegans Hypothetical
protein K08F11.2 protein.
Length = 886
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 117 LFALKIYNFPKYSKLS*YLVNIWYHQYFSHKYCQ 16
LFA+KI FP+Y K+ +L W + K CQ
Sbjct: 856 LFAIKISGFPQYHKIRDFL---WLVDFLRLKPCQ 886
>U28971-5|AAA68379.1| 982|Caenorhabditis elegans Hypothetical
protein B0244.6 protein.
Length = 982
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +1
Query: 466 FLIFSMLFSRFLTLLILNKCYNDLSICILRKIYQKKICSKYTSSNTIQRSIFRNNIKLMD 645
F+I S F +T++IL+ + IC+ I + K YTSS T+ + R L
Sbjct: 813 FIIVSFAF--LITIIILSFVF----ICLSFHIRKAKKLGSYTSSQTLHHARGRLGWTLTA 866
Query: 646 VYVHSLVE 669
+ V SL E
Sbjct: 867 IIVISLAE 874
>AC006675-6|AAK84556.2| 433|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 98 protein.
Length = 433
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 562 YQKKICSKYTSSNTIQRSIFRNNIK--LMDVYVHSLVEC 672
Y K+I +NT+++ ++R+ +K LM V+ VEC
Sbjct: 386 YSKRIARMMKINNTVEQCLYRDRVKADLMKVFEVFHVEC 424
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,612,152
Number of Sequences: 27780
Number of extensions: 324991
Number of successful extensions: 713
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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