Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6066
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    28   1.3  
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    27   2.2  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    27   2.2  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    26   6.8  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   6.8  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   9.0  

>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 591 NIIE*NHTNSISRKYVSLLLTVC 523
           NIIE  HTNSI+ K +S++ T C
Sbjct: 266 NIIE-KHTNSITEKQISVVRTYC 287


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 7   WVLSFLEAENRLLQGGCRRKCLSILKTIRDRHLDLPGNPVTCYHMKTLLLY 159
           W+  F      LL G       S+LK++R  H   P   ++   ++ +L+Y
Sbjct: 175 WIFCFCYKLPELLNGEDISTLRSVLKSLRSTHTSFPALQMSASALQAVLVY 225


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 7   WVLSFLEAENRLLQGGCRRKCLSILKTIRDRHLDLPGNPVTCYHMKTLLLY 159
           W+  F      LL G       S+LK++R  H   P   ++   ++ +L+Y
Sbjct: 175 WIFCFCYKLPELLNGEDISTLRSVLKSLRSTHTSFPALQMSASALQAVLVY 225


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 82  SVCSDISADIRLAADGSPPLGNS 14
           +V  + SA++ LAA GSP +G S
Sbjct: 262 AVAKNFSANVTLAAYGSPTMGES 284


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 235 QLISSLQCRRCPHYFLPHVDLFKGKSPTALENAAKQVWRLTR 360
           Q   SLQ  +   Y LP  D    K+PT+   + ++ WR  R
Sbjct: 53  QFARSLQNSQSSSYSLPPFDHPPSKNPTSSSLSTRKRWRQKR 94


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 100  HLDLPGNPVTCYHMK 144
            H DL  NP +CYH++
Sbjct: 1258 HYDLLHNPASCYHIR 1272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,093
Number of Sequences: 5004
Number of extensions: 47474
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)