Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6066
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0268 + 28830373-28830435,28830632-28830736,28831055-28831975     32   0.44 
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142     29   4.1  
02_05_1012 - 33495325-33495486,33495781-33495897,33496193-334962...    29   5.4  
07_03_1549 - 27633229-27633340,27633418-27633509,27633601-276342...    28   9.4  

>05_07_0268 + 28830373-28830435,28830632-28830736,28831055-28831975
          Length = 362

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 354 QP-PNLFGRVLQRRRRLALEEVHVRQEVVGAAAALERGYQLQEDPVDPVAD 205
           QP P + G V +RRRR A   VH+  +  G  +A   G  +   PV P  D
Sbjct: 117 QPRPKIDGSVRRRRRRSARALVHISIDCSGPTSARSVGAAVMPSPVAPAKD 167


>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
          Length = 407

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +1

Query: 76  ILKTIRDRHLDLPGNPVTCYHMKTLLLYECEKHPREHEWDEAAIGDRIN 222
           +L T+  +++ +PG+P+   H K L   +  +   E  +D   + D++N
Sbjct: 323 VLDTLSTQNI-IPGSPIAVNHSKVLNAVQEARRAAERAYDVPRVDDKVN 370


>02_05_1012 -
           33495325-33495486,33495781-33495897,33496193-33496280,
           33497878-33497948,33498382-33498464,33498939-33499008,
           33499743-33499839,33500156-33500210,33500285-33500308,
           33500417-33500504,33500764-33500886,33502026-33502379
          Length = 443

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 315 RRLALEEVHVRQEVVGAAAALERGYQLQEDPVDPVADGGLVPLVL 181
           RR     V  + E VG AAA ERG   +E  V+   +  + P+V+
Sbjct: 51  RRAVAAAVKAKDEAVGVAAAAERG---EEGEVEVEVEAAVTPVVV 92


>07_03_1549 -
           27633229-27633340,27633418-27633509,27633601-27634270,
           27634731-27634870,27634958-27635299
          Length = 451

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 21  PRGGEPSAARRMSAEMSEHTENNKRPP 101
           P GG+P+AARR++ E+         PP
Sbjct: 4   PEGGDPAAARRVAVELELELPLGGAPP 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,271,255
Number of Sequences: 37544
Number of extensions: 338626
Number of successful extensions: 920
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)